SecReT6
I. Summary
SecReT6 ID397 insolico
StrainArcobacter nitrofigilis DSM 7299
Repliconchromosome [Browse all T6SS(s) in this replicon]
AccessionNC_014166
Location1735158..1763308
Comment
FunctionN/A
T6SS TypeType i; subtype i1
insolico Bioinformatics investigation has been performed on this T6SS.

II. T6SS components
ComponentTssHTssDTssLTssITssATssBTssCTssETssF
Number111211111
ComponentTssGTssJTssKTssM
Number1111
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III. genome coordinates of the T6SS gene cluster
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProductNote
1Arnit_17361730220..1731044 [+], 825296273266HemK family modification methylase 
2Arnit_17371731055..1733022 [+], 1968296273267oligopeptidase A 
3Arnit_17381733069..1733545 [+], 477296273268hypothetical protein 
4Arnit_17391733566..1733841 [+], 276296273269hypothetical protein 
5Arnit_17401733846..1734901 [+], 1056296273270integrase family protein 
6Arnit_17411735158..1736636 [+], 1479296273271ImpA domain-containing protein  TssA
7Arnit_17421736648..1737136 [+], 489296273272type VI secretion protein  TssB
8Arnit_17431737146..1738621 [+], 1476296273273type VI secretion protein  TssC
9Arnit_17441738623..1739039 [+], 417296273274type VI secretion system lysozyme-like protein  TssE
10Arnit_17451739029..1740801 [+], 1773296273275type VI secretion protein  TssF
11Arnit_17461740810..1741802 [+], 993296273276type VI secretion protein  TssG
12Arnit_17471741802..1744336 [+], 2535296273277type VI secretion ATPase, ClpV1 family  TssH
13Arnit_17481744349..1744480 [+], 132296273278hypothetical protein 
14Arnit_17491744484..1745767 [+], 1284296273279FHA domain-containing protein  Fha
15Arnit_17501745778..1746227 [+], 450296273280type VI secretion lipoprotein  TssJ
16Arnit_17511746227..1747558 [+], 1332296273281type VI secretion protein  TssK
17Arnit_17521747576..1748442 [+], 867296273282type IV / VI secretion system protein  TssL
18Arnit_17531748439..1751906 [+], 3468296273283type VI secretion protein IcmF  TssM
19Arnit_17541751906..1752583 [+], 678296273284protein serine/threonine phosphatase 
20Arnit_17551752580..1753458 [+], 879296273285serine/threonine protein kinase 
21Arnit_17561753507..1754031 [+], 525296273286Hcp1 family type VI secretion system effector  TssD
22Arnit_17571754154..1757060 [+], 2907296273287Rhs element Vgr protein  TssI
23Arnit_17581757095..1758183 [+], 1089296273288Sel1 domain-containing protein repeat-containing protein 
24Arnit_17591758176..1760764 [+], 2589296273289hypothetical protein 
25Arnit_17601760774..1763308 [+], 2535296273290Rhs element Vgr protein  TssI
26Arnit_17611763296..1763886 [+], 591296273291hypothetical protein 
27Arnit_17621763886..1764143 [+], 258296273292hypothetical protein 
28Arnit_17631764407..1764658 [+], 252296273293ChW repeat-containing protein 
29Arnit_17641764633..1765316 [-], 684296273294hypothetical protein 
30Arnit_17651765448..1766446 [+], 999296273295hypothetical protein 
31Arnit_17661766459..1766857 [+], 399296273296hypothetical protein 
32Arnit_17671766952..1768028 [-], 1077296273297response regulator receiver modulated CheB methylesterase 
 
flank Genes in the 5-kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any. In the 'Note' column,if available, '(e)' denotes effector while '(i)' for immunity protein

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Proteins        Genes

V. Investigation of the genomic context of the T6SS gene cluster.
1. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the mobile genetic elements database, ACLAME.
 






2. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the virulence factor database, VFDB.
 






3. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against against the antibiotic resistance database, ARDB.
 






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