SecReT6
I. Summary
SecReT6 ID398 insolico
StrainXenorhabdus nematophila ATCC 19061
Repliconchromosome [Browse all T6SS(s) in this replicon]
AccessionNC_014228
Location2463286..2488816
Comment
FunctionN/A
T6SS TypeType i; subtype i3
insolico Bioinformatics investigation has been performed on this T6SS.

II. T6SS components
ComponentTssHTssDTssLTssITssATssBTssCTssETssF
Number111111111
ComponentTssGTssJTssKTssM
Number1111
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III. genome coordinates of the T6SS gene cluster
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProductNote
1XNC1_25112458879..2459760 [+], 882300723427hypothetical protein 
2XNC1_2512 (dadX)2459837..2460904 [-], 1068300723428alanine racemase 
3XNC1_2513 (dadA)2460927..2462228 [-], 1302300723429D-amino acid dehydrogenase subunit 
4XNC1_25142463209..2463349 [+], 141300723430hypothetical protein 
5XNC1_25152463286..2465448 [+], 2163300723431hypothetical protein  TssI
6XNC1_25162465472..2468069 [+], 2598300723432hypothetical protein 
7XNC1_25172468066..2469133 [+], 1068300723433hypothetical protein 
8XNC1_25182469148..2469768 [+], 621300723434hypothetical protein 
9XNC1_25192469779..2470171 [+], 393300723435hypothetical protein 
10XNC1_25202470460..2470810 [+], 351300723436hypothetical protein  TssJ
11XNC1_25212470807..2472150 [+], 1344300723437hypothetical protein  TssK
12XNC1_25222472164..2473384 [+], 1221300723438hypothetical protein  TssL
13XNC1_25232473397..2477005 [+], 3609300723439hypothetical protein  TssM
14XNC1_25242477036..2478082 [+], 1047300723440hypothetical protein  TssA
15XNC1_25252478260..2478802 [+], 543300723441hypothetical protein  TssB
16XNC1_25262478806..2480308 [+], 1503300723442hypothetical protein  TssC
17XNC1_25272480445..2480936 [+], 492300723443type VI secretion system effector (Hcp1 family)  TssD
18XNC1_25282481008..2482537 [+], 1530300723444hypothetical protein  Fha
19XNC1_25292482599..2483153 [+], 555300723445hypothetical protein  TssE
20XNC1_25302483187..2485061 [+], 1875300723446hypothetical protein  TssF
21XNC1_25312485064..2486098 [+], 1035300723447hypothetical protein  TssG
22XNC1_25322486177..2488816 [+], 2640300723448ClpA/B-type chaperone  TssH
23XNC1_25332488904..2490301 [-], 1398300723449hypothetical protein 
24XNC1_25342490360..2490647 [-], 288300723450hypothetical protein 
25XNC1_25352490760..2492499 [-], 1740300723451hypothetical protein 
 
flank Genes in the 5-kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any. In the 'Note' column,if available, '(e)' denotes effector while '(i)' for immunity protein

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Proteins        Genes

V. Investigation of the genomic context of the T6SS gene cluster.
1. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the mobile genetic elements database, ACLAME.
 






2. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the virulence factor database, VFDB.
 






3. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against against the antibiotic resistance database, ARDB.
 






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