SecReT6
I. Summary
SecReT6 ID399 insolico
StrainXenorhabdus nematophila ATCC 19061
Repliconchromosome [Browse all T6SS(s) in this replicon]
AccessionNC_014228
Location4336814..4358257
Comment
FunctionN/A
T6SS TypeType i; subtype i1
insolico Bioinformatics investigation has been performed on this T6SS.

II. T6SS components
ComponentTssHTssDTssLTssITssATssBTssCTssETssF
Number111021111
ComponentTssGTssJTssKTssM
Number1111
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III. genome coordinates of the T6SS gene cluster
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProductNote
1XNC1_45284332359..4332532 [+], 174300725281hypothetical protein 
2XNC1_45294332650..4333240 [+], 591300725282hypothetical protein 
3XNC1_45304333723..4333974 [-], 252300725283hypothetical protein 
4XNC1_45314333967..4334377 [-], 411300725284transposase 
5XNC1_45324334475..4334798 [-], 324300725285transposase 
6XNC1_45334334715..4335029 [+], 315300725286hypothetical protein 
7XNC1_45344335016..4335510 [+], 495300725287hypothetical protein 
8XNC1_45354335492..4336364 [+], 873300725288transposase 
9XNC1_45364336301..4336441 [+], 141300725289transposase 
10XNC1_45374336570..4336713 [+], 144300725290transposase (fragment) 
11XNC1_45384336814..4338214 [-], 1401300725291hypothetical protein  TssA
12XNC1_45394338297..4341902 [-], 3606300725292hypothetical protein  TssM
13XNC1_45404341899..4343341 [-], 1443300725293hypothetical protein  TssA
14XNC1_45414343347..4344018 [-], 672300725294hypothetical protein 
15XNC1_45424344015..4344812 [-], 798300725295hypothetical protein 
16XNC1_45444344812..4347547 [-], 2736300725296ClpA/B-type chaperone  TssH
17XNC1_45454347557..4348324 [-], 768300725297hypothetical protein  TssL
18XNC1_45464348327..4349679 [-], 1353300725298hypothetical protein  TssK
19XNC1_45474349682..4350236 [-], 555300725299hypothetical protein  TssJ
20XNC1_45484350220..4351515 [-], 1296300725300hypothetical protein  Fha
21XNC1_45494351521..4352573 [-], 1053300725301hypothetical protein  TssG
22XNC1_45504352537..4354369 [-], 1833300725302hypothetical protein  TssF
23XNC1_45514354370..4354810 [-], 441300725303hypothetical protein  TssE
24XNC1_45524354813..4356291 [-], 1479300725304hypothetical protein  TssC
25XNC1_45534356311..4356808 [-], 498300725305hypothetical protein  TssB
26XNC1_4554 (hcp)4357739..4358257 [+], 519300725306hemolysin-coregulated protein Hcp  TssD
27XNC1_4555 (xhlB)4358887..4360560 [+], 1674300725307XhlB, XhlA hemolysin secretion/activation protein (TpsB) 
 
flank Genes in the 5-kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any. In the 'Note' column,if available, '(e)' denotes effector while '(i)' for immunity protein

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Proteins        Genes

V. Investigation of the genomic context of the T6SS gene cluster.
1. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the mobile genetic elements database, ACLAME.
 






2. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the virulence factor database, VFDB.
 






3. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against against the antibiotic resistance database, ARDB.
 







Homology Effector list
ECA4275

Effector identified
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProduct  Homolog
1XNC1_4554(hcp)4357739..4358257 [+], 519300725306hemolysin-coregulated protein Hcp ECA4275

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Proteins        Genes
N/A
N/A