SecReT6
I. Summary
SecReT6 ID402 insolico
StrainErwinia billingiae Eb661
Repliconchromosome [Browse all T6SS(s) in this replicon]
AccessionNC_014306
Location676756..706663
Comment
FunctionN/A
T6SS TypeType i; subtype i3
insolico Bioinformatics investigation has been performed on this T6SS.

II. T6SS components
ComponentTssHTssDTssLTssITssATssBTssCTssETssF
Number111111111
ComponentTssGTssJTssKTssM
Number1111
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III. genome coordinates of the T6SS gene cluster
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProductNote
1EbC_05720 (yjjT)672546..673580 [-], 1035300715160ribosomal RNA small subunit methyltransferase C 
2EbC_05730 (holD)673760..674179 [+], 420300715161DNA polymerase III subunit psi 
3EbC_05740 (rimI)674292..674582 [+], 291300715162ribosomal-protein-alanine acetyltransferase 
4EbC_05750 (yjjG)674597..675277 [+], 681300715163nucleoside 5'-monophosphate phosphohydrolase 
5EbC_05760676192..676731 [+], 540300715164hypothetical protein 
6EbC_05770676756..677259 [+], 504300715165lipoprotein  TssJ
7EbC_05780677285..678628 [+], 1344300715166hypothetical protein  TssK
8EbC_05790678646..679884 [+], 1239300715167OmpA family protein  TssL
9EbC_05800679888..683508 [+], 3621300715168type VI secretion system, IcmF  TssM
10EbC_05810683530..684240 [+], 711300715169type VI secretion system-associated protein 
11EbC_05820684258..685274 [+], 1017300715170hypothetical protein  TssA
12EbC_05830685322..685849 [+], 528300715171hypothetical protein  TssB
13EbC_05840685853..687352 [+], 1500300715172hypothetical protein  TssC
14EbC_05850687947..688429 [+], 483300715173hypothetical protein  TssD
15EbC_05860691018..691419 [+], 402300715174hypothetical protein 
16EbC_05870691509..691874 [+], 366300715175hypothetical protein 
17EbC_05880692294..694342 [+], 2049300715176Forkhead-associated (FHA) protein  Fha
18EbC_05890694339..695136 [+], 798300715177protein phosphatase 2C-like protein 
19EbC_05900695155..696147 [+], 993300715178hypothetical protein 
20EbC_05910696173..696991 [+], 819300715179virulence protein, SciE type family protein  TagJ
21EbC_05920696988..697569 [+], 582300715180type VI secretion system, lysozyme-related family protein  TssE
22EbC_05930697572..699449 [+], 1878300715181type VI secretion system, VCA0110 family  TssF
23EbC_05940699446..700510 [+], 1065300715182hypothetical protein  TssG
24EbC_05950700567..703179 [+], 2613300715183type VI secretion system ATPase, ClpV1 family protein  TssH
25EbC_05960703209..704678 [+], 1470300715184Serine/threonine protein kinase 
26EbC_05970704738..706663 [+], 1926300715185Rhs element Vgr family protein  TssI
27EbC_05980706660..707094 [+], 435300715186hypothetical protein 
 
flank Genes in the 5-kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any. In the 'Note' column,if available, '(e)' denotes effector while '(i)' for immunity protein

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Proteins        Genes

V. Investigation of the genomic context of the T6SS gene cluster.
1. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the mobile genetic elements database, ACLAME.
 






2. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the virulence factor database, VFDB.
 






3. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against against the antibiotic resistance database, ARDB.
 







Homology Effector list
EC042_4529

Effector identified
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProduct  Homolog
1EbC_05520650001..650492 [-], 492300715140Virulence factor for secretion apparatus EC042_4529

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Proteins        Genes
N/A
(1) De Maayer P et al. (2011). Comparative genomics of the Type VI secretion systems of Pantoea and Erwinia species reveals the presence of putative effector islands that may be translocated by the VgrG and Hcp proteins. BMC Genomics. 12:576. [PudMed:22115407] in_silico
 
in_silico This literature contains bioinformatics investigation