SecReT6
I. Summary
SecReT6 ID404 insolico
StrainRalstonia solanacearum PSI07
Repliconmegaplasmid [Browse all T6SS(s) in this replicon]
AccessionNC_014310
Location798603..845489
Comment
FunctionN/A
T6SS TypeType i; subtype i4b
insolico Bioinformatics investigation has been performed on this T6SS.

II. T6SS components
ComponentTssHTssDTssLTssITssATssBTssCTssETssF
Number111311111
ComponentTssGTssJTssKTssM
Number1111
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III. genome coordinates of the T6SS gene cluster
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProductNote
1RPSI07_mp0647794068..794910 [+], 843300693657amino-acid-binding periplasmic ABC transporter protein 
2RPSI07_mp0648795142..796086 [-], 945300693658hypothetical protein 
3RPSI07_mp0649796108..796893 [-], 786300693659hypothetical protein 
4RPSI07_mp0650797066..798094 [-], 1029300693660hypothetical protein 
5RPSI07_mp0651798603..801947 [-], 3345300693661rhs element vgr-like protein  TssI
6RPSI07_mp0652802006..802797 [-], 792300693662secretion system protein  TssL
7RPSI07_mp0653802794..804140 [-], 1347300693663hypothetical protein  TssK
8RPSI07_mp0654804196..804777 [-], 582300693664hypothetical protein  TssJ
9RPSI07_mp0655805150..805806 [+], 657300693665hypothetical protein 
10RPSI07_mp0656805843..806355 [+], 513300693666hypothetical protein  TssB
11RPSI07_mp0657806348..807838 [+], 1491300693667hypothetical protein  TssC
12RPSI07_mp0658 (sciK)807927..808430 [+], 504300693668secretion system protein (evpc-like), hemolysin-coregulated protein  TssD
13RPSI07_mp0659808491..808964 [+], 474300693669secretion system protein  TssE
14RPSI07_mp0660809027..810877 [+], 1851300693670type VI secretion protein (duf879)  TssF
15RPSI07_mp0661810841..811944 [+], 1104300693671type VI secretion protein, vc_a0111 family  TssG
16RPSI07_mp0662 (clpB)811977..814694 [+], 2718300693672chaperone clpb  TssH
17RPSI07_mp0663814715..817465 [+], 2751300693673rhs element vgr-related protein  TssI
18RPSI07_mp0665818443..821793 [+], 3351300693674hypothetical protein 
19RPSI07_mp0667822743..823744 [+], 1002300693675hypothetical protein 
20RPSI07_mp0668823767..824930 [-], 1164300693676transposase 
21RPSI07_mp0669824996..825367 [-], 372300693677transposase, is4-like 
22RPSI07_mp0671825865..826932 [+], 1068300693678hypothetical protein 
23RPSI07_mp0672826941..828038 [+], 1098300693679hypothetical protein 
24RPSI07_mp0673828373..829503 [+], 1131300693680hypothetical protein 
25RPSI07_mp0674829487..830860 [+], 1374300693681rhs element vgr-related protein (fragment)  TssI
26RPSI07_mp0675830839..830964 [+], 126300693682hypothetical protein 
27RPSI07_mp0676831006..831332 [-], 327300693683hypothetical protein 
28RPSI07_mp0677831373..831786 [+], 414300693684hypothetical protein 
29RPSI07_mp0678831915..833258 [+], 1344300693685lipoprotein yddw 
30RPSI07_mp0679833457..834467 [+], 1011300693686hypothetical protein  TssA
31RPSI07_mp0680834653..835105 [-], 453300693687hypothetical protein 
32RPSI07_mp0681835136..836020 [-], 885300693688hypothetical protein 
33RPSI07_mp0682836020..836592 [-], 573300693689hypothetical protein 
34RPSI07_mp0683836592..838163 [-], 1572300693690hypothetical protein 
35RPSI07_mp0684838218..839090 [-], 873300693691hypothetical protein 
36RPSI07_mp0685839738..840580 [-], 843300693692outer membrane protein; ompa/motb domain  TagL
37RPSI07_mp0686840577..841563 [-], 987300693693hypothetical protein 
38RPSI07_mp0687841560..845489 [-], 3930300693694secretion system protein  TssM
39RPSI07_mp0688845527..846984 [-], 1458300693695hypothetical protein 
40RPSI07_mp0689847025..847294 [-], 270300693696hypothetical protein  PAAR
41RPSI07_mp0690847334..848146 [-], 813300693697carboxypeptidase 
42RPSI07_mp0691848468..849259 [+], 792300693698transmembrane protein 
 
flank Genes in the 5-kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any. In the 'Note' column,if available, '(e)' denotes effector while '(i)' for immunity protein

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Proteins        Genes

V. Investigation of the genomic context of the T6SS gene cluster.
1. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the mobile genetic elements database, ACLAME.
 






2. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the virulence factor database, VFDB.
 






3. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against against the antibiotic resistance database, ARDB.
 







Homology Effector list
BCAL0343

Effector identified
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProduct  Homolog
1RPSI07_mp0658(sciK)807927..808430 [+], 504300693668secretion system protein (evpc-like), hemolysin-coregulated protein BCAL0343

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Proteins        Genes
N/A
N/A