SecReT6
I. Summary
SecReT6 ID405 insolico
StrainHerbaspirillum seropedicae SmR1
Repliconchromosome [Browse all T6SS(s) in this replicon]
AccessionNC_014323
Location803061..844830
Comment
FunctionN/A
T6SS TypeType i; subtype i4b
insolico Bioinformatics investigation has been performed on this T6SS.

II. T6SS components
ComponentTssHTssDTssLTssITssATssBTssCTssETssF
Number111311111
ComponentTssGTssJTssKTssM
Number1111
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III. genome coordinates of the T6SS gene cluster
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProductNote
1Hsero_0731798392..799237 [-], 846300310066hypothetical protein 
2Hsero_0732799268..800377 [-], 1110300310067diguanylate cyclase GGDEF family protein 
3Hsero_0733800673..802172 [-], 1500300310068oxidoreductase, oxygen dependent, FAD-dependent protein 
4Hsero_0734802303..802506 [-], 204300310069hypothetical protein 
5Hsero_0735802528..802962 [-], 435300310070hypothetical protein 
6Hsero_0736803061..805925 [-], 2865300310071VGR-related protein  TssI
7Hsero_0737805963..806754 [-], 792300310072hypothetical protein  TssL
8Hsero_0738806751..808097 [-], 1347300310073hypothetical protein  TssK
9Hsero_0739808195..808719 [-], 525300310074hypothetical protein  TssJ
10Hsero_0740809228..809857 [+], 630300310075lipoprotein 
11Hsero_0741809942..810442 [+], 501300310076hypothetical protein  TssB
12Hsero_0742810454..811941 [+], 1488300310077hypothetical protein  TssC
13Hsero_0743811974..812465 [+], 492300310078hypothetical protein  TssD
14Hsero_0744812608..813096 [+], 489300310079hypothetical protein  TssE
15Hsero_0745813097..814941 [+], 1845300310080hypothetical protein  TssF
16Hsero_0746814905..815987 [+], 1083300310081hypothetical protein  TssG
17Hsero_0747 (clpB)816027..818708 [+], 2682300310082ClpA/B-type chaperone protein  TssH
18Hsero_0748 (vgr)818820..821654 [+], 2835300310083VGR-related type VI secretion system protein  TssI
19Hsero_0749821697..822632 [+], 936300310084hypothetical protein 
20Hsero_0750822654..825866 [+], 3213300310085hypothetical protein 
21Hsero_0751826067..826816 [+], 750300310086hypothetical protein 
22Hsero_0752827071..828072 [+], 1002300310087hypothetical protein 
23Hsero_0753828086..829105 [+], 1020300310088hypothetical protein 
24Hsero_0754829254..830219 [+], 966300310089hypothetical protein 
25Hsero_0755830344..831471 [+], 1128300310090hypothetical protein  TssA
26Hsero_0756831617..832432 [-], 816300310091outer membrane protein and related peptidoglycan-associated (lipo)proteins  TagL
27Hsero_0757832436..833422 [-], 987300310092hypothetical protein 
28Hsero_0758833419..837294 [-], 3876300310093hypothetical protein  TssM
29Hsero_0759837325..838851 [-], 1527300310094hypothetical protein 
30Hsero_0760838891..839148 [-], 258300310095hypothetical protein  PAAR
31Hsero_0761839239..840078 [-], 840300310096hypothetical protein 
32Hsero_0762840383..841696 [-], 1314300310097hypothetical protein 
33Hsero_0763841882..844830 [+], 2949300310098VGR-related protein  TssI
34Hsero_0764844827..845765 [+], 939300310099hypothetical protein 
35Hsero_0765845762..846247 [+], 486300310100hypothetical protein 
36Hsero_0766846265..846759 [+], 495300310101hypothetical protein 
37Hsero_0767846883..847380 [+], 498300310102hypothetical protein 
38Hsero_0768847406..849568 [+], 2163300310103hypothetical protein 
 
flank Genes in the 5-kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any. In the 'Note' column,if available, '(e)' denotes effector while '(i)' for immunity protein

Download FASTA format files
Proteins        Genes

V. Investigation of the genomic context of the T6SS gene cluster.
1. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the mobile genetic elements database, ACLAME.
 






2. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the virulence factor database, VFDB.
 






3. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against against the antibiotic resistance database, ARDB.
 






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