SecReT6
I. Summary
SecReT6 ID406 insolico
StrainHerbaspirillum seropedicae SmR1
Repliconchromosome [Browse all T6SS(s) in this replicon]
AccessionNC_014323
Location4619344..4638857
Comment
FunctionN/A
T6SS TypeType i; subtype i4b
insolico Bioinformatics investigation has been performed on this T6SS.

II. T6SS components
ComponentTssHTssDTssLTssITssATssBTssCTssETssF
Number111011111
ComponentTssGTssJTssKTssM
Number1111
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III. genome coordinates of the T6SS gene cluster
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProductNote
1Hsero_4025 (tsr)4615653..4617287 [+], 1635300313312methyl-accepting chemotaxis protein I 
2Hsero_40264617749..4618588 [+], 840300313313peptidase M15B and M15C, D,D-carboxypeptidase VanY/endolysins protein 
3Hsero_40274619344..4623144 [+], 3801300313314hypothetical protein  TssM
4Hsero_40284623141..4624133 [+], 993300313315hypothetical protein 
5Hsero_40294624137..4624940 [+], 804300313316lipoprotein  TagL
6Hsero_40304625023..4626150 [-], 1128300313317hypothetical protein  TssA
7Hsero_4031 (clpB)4626207..4628876 [-], 2670300313318ClpA/B-type chaperone ATPase  TssH
8Hsero_40324628948..4630036 [-], 1089300313319hypothetical protein  TssG
9Hsero_40334630000..4631844 [-], 1845300313320hypothetical protein  TssF
10Hsero_40344631845..4632333 [-], 489300313321hypothetical protein  TssE
11Hsero_40354632455..4632946 [-], 492300313322hypothetical protein  TssD
12Hsero_40364632981..4634474 [-], 1494300313323hypothetical protein  TssC
13Hsero_40374634485..4634985 [-], 501300313324hypothetical protein  TssB
14Hsero_40384635075..4635677 [-], 603300313325lipoprotein 
15Hsero_40394636044..4636673 [+], 630300313326hypothetical protein  TssJ
16Hsero_40404636735..4638081 [+], 1347300313327hypothetical protein  TssK
17Hsero_40414638084..4638857 [+], 774300313328type IV / VI secretion system transmembrane protein  TssL
18Hsero_40424639153..4640658 [+], 1506300313329hypothetical protein 
19Hsero_40434641272..4641862 [+], 591300313330hypothetical protein 
20Hsero_4045 (sspB)4642298..4642795 [-], 498300313331stringent starvation B protein 
21Hsero_4046 (sspA)4642928..4643539 [-], 612300313332stringent starvation transcription regulator A protein 
 
flank Genes in the 5-kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any. In the 'Note' column,if available, '(e)' denotes effector while '(i)' for immunity protein

Download FASTA format files
Proteins        Genes

V. Investigation of the genomic context of the T6SS gene cluster.
1. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the mobile genetic elements database, ACLAME.
 






2. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the virulence factor database, VFDB.
 






3. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against against the antibiotic resistance database, ARDB.
 






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