I. Summary
SecReT6 ID408 insolico
StrainGamma proteobacterium HdN1
Repliconchromosome [Browse all T6SS(s) in this replicon]
T6SS TypeType i; subtype i1
insolico Bioinformatics investigation has been performed on this T6SS.

II. T6SS components
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III. genome coordinates of the T6SS gene cluster
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProductNote
1HDN1F_120201488400..1489599 [+], 1200304310840Major facilitator superfamily protein 
2HDN1F_120301489628..1489870 [+], 243304310841hypothetical protein 
3HDN1F_120401489914..1490891 [+], 978304310842hypothetical protein 
4HDN1F_12050 (katA)1490965..1492440 [-], 1476304310843catalase 
5HDN1F_120601492541..1493746 [-], 1206304310844hypothetical protein  TssG
6HDN1F_120701493887..1495713 [-], 1827304310845hypothetical protein  TssF
7HDN1F_120801495734..1496264 [-], 531304310846hypothetical protein  TssE
8HDN1F_12090 (hcP-2)1496299..1496793 [-], 495304310847hypothetical protein  TssD
9HDN1F_121001496869..1498737 [-], 1869304310848hypothetical protein  TssC
10HDN1F_121101498750..1502310 [-], 3561304310849hypothetical protein  TssM
11HDN1F_121201502338..1503051 [-], 714304310850hypothetical protein  TssL
12HDN1F_121301503097..1504488 [-], 1392304310851hypothetical protein  TssK
13HDN1F_121401504530..1505294 [-], 765304310852hypothetical protein  TssJ
14HDN1F_121501505371..1505889 [-], 519304310853hypothetical protein  TssD
15HDN1F_121601505977..1507449 [-], 1473304310854hypothetical protein  TssC
16HDN1F_121701507524..1508012 [-], 489304310855hypothetical protein  TssB
17HDN1F_121801508204..1508548 [-], 345304310856hypothetical protein 
18HDN1F_121901508606..1510456 [-], 1851304310857sigma factor SigB regulation protein 
19HDN1F_122001510460..1511710 [-], 1251304310858hypothetical protein 
20HDN1F_12210 (odc)1511721..1512884 [-], 1164304310859Ornithine decarboxylase 
21HDN1F_122201512895..1513674 [-], 780304310860hypothetical protein 
22HDN1F_122301513679..1515109 [-], 1431304310861hypothetical protein 
23HDN1F_12240 (pknB)1515106..1516398 [-], 1293304310862hypothetical protein 
24HDN1F_122501516474..1516887 [-], 414304310863hypothetical protein 
25HDN1F_122601516902..1517525 [-], 624304310864hypothetical protein 
26HDN1F_122701517530..1518612 [-], 1083304310865hypothetical protein 
27HDN1F_122801518609..1521458 [-], 2850304310866hypothetical protein 
28HDN1F_122901521464..1524319 [-], 2856304310867hypothetical protein  TssI
29HDN1F_123001524512..1526281 [-], 1770304310868Sulphate anion transporter 
30HDN1F_123101526440..1526745 [+], 306304310869hypothetical protein 
31HDN1F_12320 (hit)1526783..1527241 [-], 459304310870diadenosine tetraphosphate (Ap4A) hydrolase 
32HDN1F_123301527238..1528239 [-], 1002304310871hypothetical protein 
33HDN1F_123401528581..1528865 [+], 285304310872hypothetical protein 
flank Genes in the 5-kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any. In the 'Note' column,if available, '(e)' denotes effector while '(i)' for immunity protein

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Proteins        Genes

V. Investigation of the genomic context of the T6SS gene cluster.
1. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the mobile genetic elements database, ACLAME.

2. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the virulence factor database, VFDB.

3. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against against the antibiotic resistance database, ARDB.