SecReT6
I. Summary
SecReT6 ID410 insolico
StrainHalomonas elongata DSM 2581
Repliconchromosome [Browse all T6SS(s) in this replicon]
AccessionNC_014532
Location2227498..2259592
Comment
FunctionN/A
T6SS TypeType i; subtype i1
insolico Bioinformatics investigation has been performed on this T6SS.

II. T6SS components
ComponentTssHTssDTssLTssITssATssBTssCTssETssF
Number111211111
ComponentTssGTssJTssKTssM
Number1111
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III. genome coordinates of the T6SS gene cluster
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProductNote
1HELO_29052223059..2226655 [-], 3597307545495hypothetical protein 
2HELO_29062226686..2227489 [-], 804307545496hypothetical protein 
3HELO_2907 (vgrG)2227498..2229576 [-], 2079307545497rhs element Vgr protein  TssI
4HELO_29082229578..2229865 [-], 288307545498hypothetical protein  PAAR
5HELO_29092229897..2230511 [-], 615307545499hypothetical protein 
6HELO_2910 (pmt1)2230495..2234148 [-], 3654307545500hypothetical protein  TssM
7HELO_29112234194..2235633 [-], 1440307545501hypothetical protein  TssA
8HELO_29122235645..2236304 [-], 660307545502hypothetical protein 
9HELO_29132236301..2237926 [-], 1626307545503sigma-54 dependent transcriptional regulator 
10HELO_29142237928..2240549 [-], 2622307545504ATPase AAA  TssH
11HELO_29152240576..2241391 [-], 816307545505hypothetical protein  TssL
12HELO_29162241395..2242729 [-], 1335307545506hypothetical protein  TssK
13HELO_29172242729..2243283 [-], 555307545507hypothetical protein  TssJ
14HELO_29182243280..2244602 [-], 1323307545508FHA domain-containing protein  Fha
15HELO_29192244607..2245626 [-], 1020307545509hypothetical protein  TssG
16HELO_29202245590..2247353 [-], 1764307545510hypothetical protein  TssF
17HELO_29212247361..2247795 [-], 435307545511hypothetical protein  TssE
18HELO_29222247800..2249287 [-], 1488307545512hypothetical protein  TssC
19HELO_29232249318..2249836 [-], 519307545513hypothetical protein  TssB
20HELO_29242250292..2251344 [-], 1053307545514hypothetical protein 
21HELO_29252251568..2252545 [-], 978307545515hypothetical protein 
22HELO_29262252548..2255907 [-], 3360307545516hypothetical protein 
23HELO_29272255895..2256767 [-], 873307545517hypothetical protein 
24HELO_2928 (vgrG)2256752..2258833 [-], 2082307545518rhs element Vgr protein  TssI
25HELO_2929 (hcp7)2259074..2259592 [-], 519307545519hypothetical protein  TssD
26HELO_29302259845..2260549 [-], 705307545520lipoate-protein ligase A 
27HELO_2931 (ivd)2260778..2261947 [+], 1170307545521hypothetical protein 
28HELO_2932 (mccB)2262010..2263617 [+], 1608307545522propionyl-CoA carboxylase 
 
flank Genes in the 5-kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any. In the 'Note' column,if available, '(e)' denotes effector while '(i)' for immunity protein

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Proteins        Genes

V. Investigation of the genomic context of the T6SS gene cluster.
1. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the mobile genetic elements database, ACLAME.
 






2. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the virulence factor database, VFDB.
 






3. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against against the antibiotic resistance database, ARDB.
 







Homology Effector list
ECA2866 , ECA2866

Effector identified
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProduct  Homolog
1HELO_2929(hcp7)2259074..2259592 [-], 519307545519hypothetical protein ECA2866
2HELO_4078(hcp7)3608866..3609384 [-], 519307546668hypothetical protein ECA2866

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Proteins        Genes
N/A
N/A