SecReT6
I. Summary
SecReT6 ID411 insolico
StrainPantoea vagans C9-1
Repliconchromosome [Browse all T6SS(s) in this replicon]
AccessionNC_014562
Location1073370..1102136
Comment
FunctionN/A
T6SS TypeType i; subtype i3
insolico Bioinformatics investigation has been performed on this T6SS.

II. T6SS components
ComponentTssHTssDTssLTssITssATssBTssCTssETssF
Number111111111
ComponentTssGTssJTssKTssM
Number1111
Click the above image to have a larger view
III. genome coordinates of the T6SS gene cluster
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProductNote
1Pvag_1018 (guaa1)1068653..1069378 [+], 726308186529GMP synthase 
2Pvag_10191069366..1069929 [-], 564308186530trans-aconitate 2-methyltransferase 
3Pvag_1020 (aldB)1070163..1071683 [+], 1521308186531aldehyde dehydrogenase 
4Pvag_10211072750..1073346 [+], 597308186532type VI secretion system-associated hypothetical protein 
5Pvag_10221073370..1073867 [+], 498308186533type VI secretion system, core protein  TssJ
6Pvag_10231073873..1075213 [+], 1341308186534type VI secretion system, core protein  TssK
7Pvag_10241075231..1076469 [+], 1239308186535type VI secretion system, core protein  TssL
8Pvag_10251076473..1080102 [+], 3630308186536type VI secretion system, core protein  TssM
9Pvag_10261080117..1080833 [+], 717308186537type VI secretion system-associated hypothetical protein 
10Pvag_10271080844..1081866 [+], 1023308186538type VI secretion system, core protein  TssA
11Pvag_10281081946..1082479 [+], 534308186539type VI secretion system, core protein  TssB
12Pvag_10291082476..1083975 [+], 1500308186540type VI secretion system, core protein  TssC
13Pvag_10301084021..1084281 [+], 261308186541hypothetical protein 
14Pvag_1031 (hcp)1084523..1085005 [+], 483308186542type VI secretion system, effector protein hcp  TssD
15Pvag_10321085110..1086102 [+], 993308186543type VI secretion system-associated hypothetical protein 
16Pvag_10331086655..1087038 [+], 384308186544type VI secretion system-associated hypothetical protein 
17Pvag_10341086992..1087450 [+], 459308186545type VI secretion system-associated hypothetical protein 
18Pvag_10351087748..1089607 [+], 1860308186546type VI secretion system, core protein  Fha
19Pvag_10361089604..1090395 [+], 792308186547type VI secretion system, Serine/threonine protein phosphatase 
20Pvag_10371090322..1091383 [+], 1062308186548type VI secretion system-associated hypothetical protein 
21Pvag_10381091400..1092227 [+], 828308186549type VI secretion system-associated hypothetical protein  TagJ
22Pvag_10391092217..1092792 [+], 576308186550type VI secretion system, core protein  TssE
23Pvag_10401092795..1094666 [+], 1872308186551type VI secretion system, core protein  TssF
24Pvag_10411094525..1095709 [+], 1185308186552type VI secretion system, core protein  TssG
25Pvag_1042 (clpV)1095764..1098373 [+], 2610308186553type VI secretion system, core protein ATPase  TssH
26Pvag_10431098401..1099903 [+], 1503308186554type VI secretion system, serine- threonine protein kinase 
27Pvag_1044 (vgrS)1099920..1102136 [+], 2217308186555type VI secretion system, effector protein vgrS  TssI
28Pvag_10451102497..1103285 [+], 789308186556hypothetical protein 
29Pvag_10461104441..1105286 [+], 846308186557hypothetical protein 
30Pvag_10471105367..1105744 [+], 378308186558hypothetical protein 
 
flank Genes in the 5-kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any. In the 'Note' column,if available, '(e)' denotes effector while '(i)' for immunity protein

Download FASTA format files
Proteins        Genes

V. Investigation of the genomic context of the T6SS gene cluster.
1. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the mobile genetic elements database, ACLAME.
 






2. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the virulence factor database, VFDB.
 






3. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against against the antibiotic resistance database, ARDB.
 







Homology Effector list
SMA2263 , ECL_01567

Effector identified
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProduct  Homolog
1Pvag_1031(hcp)1084523..1085005 [+], 483308186542type VI secretion system, effector protein hcp SMA2263
2Pvag_1048(rhs)1105748..1110229 [+], 4482308186559Rhs-family protein ECL_01567

Download FASTA format files
Proteins        Genes
N/A
(1) De Maayer P et al. (2011). Comparative genomics of the Type VI secretion systems of Pantoea and Erwinia species reveals the presence of putative effector islands that may be translocated by the VgrG and Hcp proteins. BMC Genomics. 12:576. [PudMed:22115407] in_silico
 
in_silico This literature contains bioinformatics investigation