SecReT6
I. Summary
SecReT6 ID412 insolico
StrainAchromobacter xylosoxidans A8
Repliconchromosome [Browse all T6SS(s) in this replicon]
AccessionNC_014640
Location6106103..6145441
Comment
FunctionN/A
T6SS TypeType i; subtype i4b
insolico Bioinformatics investigation has been performed on this T6SS.

II. T6SS components
ComponentTssHTssDTssLTssITssATssBTssCTssETssF
Number111311111
ComponentTssGTssJTssKTssM
Number1111
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III. genome coordinates of the T6SS gene cluster
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProductNote
1AXYL_056836101685..6102614 [-], 930311108844hypothetical protein 
2AXYL_056846102614..6105250 [-], 2637311108845hypothetical protein 
3AXYL_056856105240..6106085 [-], 846311108846hypothetical protein 
4AXYL_056866106103..6108805 [-], 2703311108847Rhs element Vgr family protein 1  TssI
5AXYL_05687 (clpB2)6108820..6111519 [-], 2700311108848chaperone protein ClpB  TssH
6AXYL_056886111538..6112620 [-], 1083311108849hypothetical protein  TssG
7AXYL_056896112593..6114431 [-], 1839311108850hypothetical protein  TssF
8AXYL_056906114486..6114974 [-], 489311108851type VI secretion system, lysozyme-related family protein 1  TssE
9AXYL_056916115037..6115540 [-], 504311108852type VI secretion system effector, Hcp1 family protein  TssD
10AXYL_056926115581..6117074 [-], 1494311108853hypothetical protein  TssC
11AXYL_056936117067..6117591 [-], 525311108854hypothetical protein  TssB
12AXYL_056946117636..6118325 [-], 690311108855tetratricopeptide repeat family protein 12 
13AXYL_056956118626..6119132 [+], 507311108856hypothetical protein  TssJ
14AXYL_056966119214..6120560 [+], 1347311108857hypothetical protein  TssK
15AXYL_056976120570..6121349 [+], 780311108858type IV/VI secretion system protein, DotU family domain-containing protein  TssL
16AXYL_056986121389..6126590 [+], 5202311108859Rhs element Vgr family protein 2  TssI
17AXYL_056996126571..6127197 [+], 627311108860hypothetical protein 
18AXYL_057006127221..6127571 [-], 351311108861hypothetical protein 
19AXYL_057016127591..6127953 [-], 363311108862hypothetical protein 
20AXYL_057026127963..6128331 [-], 369311108863hypothetical protein 
21AXYL_057036128324..6128512 [-], 189311108864hypothetical protein 
22AXYL_057046128708..6128806 [-], 99311108865hypothetical protein 
23AXYL_057056128811..6129167 [-], 357311108866hypothetical protein 
24AXYL_057066129160..6129513 [-], 354311108867hypothetical protein 
25AXYL_057076129575..6131959 [-], 2385311108868phospholipase D 
26AXYL_057086131997..6135302 [-], 3306311108869Rhs element Vgr family protein 3  TssI
27AXYL_057096135329..6136219 [-], 891311108870hypothetical protein 
28AXYL_057106136410..6137261 [+], 852311108871D-alanyl-D-alanine carboxypeptidase 
29AXYL_057116137290..6138678 [+], 1389311108872hypothetical protein 
30AXYL_057126138702..6142502 [+], 3801311108873hypothetical protein  TssM
31AXYL_057136142499..6143482 [+], 984311108874hypothetical protein 
32AXYL_057146143485..6144279 [+], 795311108875OmpA family protein 4  TagL
33AXYL_057156144335..6145441 [-], 1107311108876ImpA-related N-terminal domain-containing protein 1  TssA
34AXYL_057166145615..6145866 [+], 252311108877hypothetical protein 
35AXYL_057176145903..6146172 [+], 270311108878PAAR motif family protein 2  PAAR
36AXYL_057186146169..6146612 [-], 444311108879hypothetical protein 
37AXYL_057196146928..6148199 [+], 1272311108880tetratricopeptide repeat family protein 13 
38AXYL_057206148265..6148429 [+], 165311108881hypothetical protein 
39AXYL_05721 (mtnN)6148442..6149197 [-], 756311108882MTA/SAH nucleosidase 
 
flank Genes in the 5-kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any. In the 'Note' column,if available, '(e)' denotes effector while '(i)' for immunity protein

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Proteins        Genes

V. Investigation of the genomic context of the T6SS gene cluster.
1. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the mobile genetic elements database, ACLAME.
 






2. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the virulence factor database, VFDB.
 






3. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against against the antibiotic resistance database, ARDB.
 







Homology Effector list
BCAL0343

Effector identified
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProduct  Homolog
1AXYL_056916115037..6115540 [-], 504311108852type VI secretion system effector, Hcp1 family protein BCAL0343

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Proteins        Genes
N/A
N/A