SecReT6
I. Summary
SecReT6 ID413 insolico
StrainAchromobacter xylosoxidans A8
Repliconchromosome [Browse all T6SS(s) in this replicon]
AccessionNC_014640
Location6860391..6882823
Comment
FunctionN/A
T6SS TypeType i; subtype i3
insolico Bioinformatics investigation has been performed on this T6SS.

II. T6SS components
ComponentTssHTssDTssLTssITssATssBTssCTssETssF
Number111111111
ComponentTssGTssJTssKTssM
Number1111
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III. genome coordinates of the T6SS gene cluster
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProductNote
1AXYL_06378 (cyaY)6856466..6856795 [-], 330311109533iron donor protein CyaY 
2AXYL_063796856826..6857011 [+], 186311109534lipoprotein 16 
3AXYL_06380 (lysA2)6857008..6858300 [+], 1293311109535diaminopimelate decarboxylase 
4AXYL_063816858361..6859623 [-], 1263311109536response regulator 21 
5AXYL_063826859643..6860377 [-], 735311109537type VI secretion-associated protein, BMA_A0400 family protein 
6AXYL_063836860391..6864020 [-], 3630311109538hypothetical protein  TssM
7AXYL_063846864017..6865294 [-], 1278311109539type VI secretion system OmpA/MotB family protein  TssL
8AXYL_063856865322..6866656 [-], 1335311109540hypothetical protein  TssK
9AXYL_063866866675..6867214 [-], 540311109541lipoprotein 3  TssJ
10AXYL_063876867354..6867725 [+], 372311109542hypothetical protein 
11AXYL_063886867753..6868514 [+], 762311109543FHA domain-containing protein  Fha
12AXYL_06389 (clpB3)6868519..6871128 [-], 2610311109544chaperone protein ClpB  TssH
13AXYL_063906871143..6872246 [-], 1104311109545hypothetical protein  TssG
14AXYL_063916872251..6872883 [-], 633311109546hypothetical protein 
15AXYL_063926872912..6874816 [-], 1905311109547hypothetical protein  TssF
16AXYL_063936874816..6875367 [-], 552311109548type VI secretion system, lysozyme-related family protein 2  TssE
17AXYL_063946875367..6876182 [-], 816311109549ImpE family protein  TagJ
18AXYL_063956876196..6876681 [-], 486311109550hypothetical protein  TssD
19AXYL_063966876735..6878237 [-], 1503311109551hypothetical protein  TssC
20AXYL_063976878269..6878820 [-], 552311109552hypothetical protein  TssB
21AXYL_063986878860..6879903 [-], 1044311109553ImpA-related N-terminal domain-containing protein 2  TssA
22AXYL_063996880436..6882823 [+], 2388311109554Rhs element Vgr family protein 4  TssI
23AXYL_064006882831..6883235 [+], 405311109555hypothetical protein 
24AXYL_064016883238..6885865 [+], 2628311109556pentapeptide repeats family protein 
25AXYL_064026885862..6886920 [+], 1059311109557pentapeptide repeat family protein 2 
26AXYL_064036886967..6887350 [+], 384311109558hypothetical protein 
 
flank Genes in the 5-kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any. In the 'Note' column,if available, '(e)' denotes effector while '(i)' for immunity protein

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Proteins        Genes

V. Investigation of the genomic context of the T6SS gene cluster.
1. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the mobile genetic elements database, ACLAME.
 






2. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the virulence factor database, VFDB.
 






3. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against against the antibiotic resistance database, ARDB.
 






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