SecReT6
I. Summary
SecReT6 ID416 insolico
StrainMesorhizobium ciceri biovar biserrulae WSM1271
Repliconplasmid pMESCI01 [Browse all T6SS(s) in this replicon]
AccessionNC_014918
Location296709..340770
Comment
FunctionN/A
T6SS TypeType i; subtype i3
insolico Bioinformatics investigation has been performed on this T6SS.

II. T6SS components
ComponentTssHTssDTssLTssITssATssBTssCTssETssF
Number112211111
ComponentTssGTssJTssKTssM
Number1112
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III. genome coordinates of the T6SS gene cluster
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProductNote
1Mesci_6356292432..293157 [+], 726319778076hypothetical protein 
2Mesci_6357293397..296576 [+], 3180319778077outer membrane autotransporter barrel domain protein 
3Mesci_6358296709..297818 [+], 1110319778078ompa/motb domain protein  TagL
4Mesci_6359297830..299080 [+], 1251319778079peptidase c14 caspase catalytic subunit p20 
5Mesci_6360299126..299713 [-], 588319778080hypothetical protein 
6Mesci_6361299886..300416 [+], 531319778081ompa/motb domain protein  TagL
7Mesci_6362300517..302847 [-], 2331319778082peptidase m23 
8Mesci_6363302844..303239 [-], 396319778083hypothetical protein 
9Mesci_6364303339..305747 [-], 2409319778084serine/threonine-protein kinase-like domain 
10Mesci_6365305753..306526 [-], 774319778085stage II sporulation protein e 
11Mesci_6366306693..310256 [-], 3564319778086type VI secretion protein icmf  TssM
12Mesci_6367310276..311772 [-], 1497319778087type IV / vi secretion system protein, dotu family  TssL
13Mesci_6368312068..313108 [-], 1041319778088type VI secretion system fha domain protein  Fha
14Mesci_6369313474..315801 [+], 2328319778089type VI secretion system vgr family protein  TssI
15Mesci_6370315805..316230 [+], 426319778090hypothetical protein  TssI
16Mesci_6371316230..317315 [+], 1086319778091hypothetical protein 
17Mesci_6372317361..318158 [-], 798319778092hypothetical protein 
18Mesci_6373318146..318715 [-], 570319778093cell wall assembly/cell proliferation coordinating protein, knr4-like protein 
19Mesci_6374318731..319492 [-], 762319778094hypothetical protein 
20Mesci_6375319492..320547 [-], 1056319778095beta-ketoacyl synthase 
21Mesci_6376320540..321601 [-], 1062319778096hypothetical protein 
22Mesci_6377321605..322132 [-], 528319778097type VI secretion-associated protein, bma_a0400 family 
23Mesci_6378322129..325668 [-], 3540319778098type VI secretion protein icmf  TssM
24Mesci_6379325670..326992 [-], 1323319778099type IV / vi secretion system protein, dotu family  TssL
25Mesci_6380326997..328331 [-], 1335319778100type VI secretion protein, vc_a0114 family  TssK
26Mesci_6381328372..328824 [-], 453319778101type VI secretion lipoprotein, vc_a0113 family  TssJ
27Mesci_6382328828..330300 [-], 1473319778102type VI secretion system fha domain protein  Fha
28Mesci_6383330297..331364 [-], 1068319778103type VI secretion protein, vc_a0111 family  TssG
29Mesci_6384331328..333202 [-], 1875319778104type VI secretion protein, vc_a0110 family  TssF
30Mesci_6385333204..333959 [-], 756319778105type VI secretion system lysozyme-related protein  TssE
31Mesci_6386333946..334404 [-], 459319778106type VI secretion system effector, hcp1 family  TssD
32Mesci_6387334451..335962 [-], 1512319778107type VI secretion protein, evpb/vc_a0108 family  TssC
33Mesci_6388335959..336498 [-], 540319778108type VI secretion protein, vc_a0107 family  TssB
34Mesci_6389336505..337677 [-], 1173319778109type VI secretion-associated protein, impa family  TssA
35Mesci_6390338005..340770 [+], 2766319778110type VI secretion atpase, clpv1 family  TssH
36Mesci_6391341135..341350 [-], 216319778111hypothetical protein 
37Mesci_6392341470..341955 [+], 486319778112hypothetical protein 
38Mesci_6394342467..343864 [-], 1398319778113integrase catalytic region 
39Mesci_6395344199..344399 [+], 201319778114hypothetical protein 
 
flank Genes in the 5-kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any. In the 'Note' column,if available, '(e)' denotes effector while '(i)' for immunity protein

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Proteins        Genes

V. Investigation of the genomic context of the T6SS gene cluster.
1. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the mobile genetic elements database, ACLAME.
 






2. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the virulence factor database, VFDB.
 






3. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against against the antibiotic resistance database, ARDB.
 






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