SecReT6
I. Summary
SecReT6 ID419 insolico
StrainVariovorax paradoxus EPS
Repliconchromosome [Browse all T6SS(s) in this replicon]
AccessionNC_014931
Location3511796..3532189
Comment
FunctionN/A
T6SS TypeType i; subtype i3
insolico Bioinformatics investigation has been performed on this T6SS.

II. T6SS components
ComponentTssHTssDTssLTssITssATssBTssCTssETssF
Number211011100
ComponentTssGTssJTssKTssM
Number1111
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III. genome coordinates of the T6SS gene cluster
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProductNote
1Varpa_32583507392..3507796 [+], 405319793915glutathione-dependent formaldehyde-activating protein 
2Varpa_32593507800..3508339 [-], 540319793916GCN5-like N-acetyltransferaser 
3Varpa_32603508350..3508790 [-], 441319793917lipoprotein 
4Varpa_32613508795..3510234 [-], 1440319793918exodeoxyribonuclease i 
5Varpa_32623510235..3511680 [-], 1446319793919phospholipase d/transphosphatidylase 
6Varpa_32633511796..3514117 [-], 2322319793920ATP-dependent clp protease, ATP-binding subunit clpa  TssH
7Varpa_32643514185..3514544 [-], 360319793921ATP-dependent clp protease adaptor protein clps 
8Varpa_32663515293..3516279 [-], 987319793922impa domain-containing protein  TssA
9Varpa_32673516299..3517456 [-], 1158319793923type VI secretion protein  TssG
10Varpa_32683517453..3518454 [-], 1002319793924hypothetical protein 
11Varpa_32693518547..3519263 [-], 717319793925type VI secretion system-associated 
12Varpa_32703519276..3523274 [-], 3999319793926type VI secretion protein icmf  TssM
13Varpa_32713523295..3524671 [-], 1377319793927DotU family type IV/VI secretion system protein  TssL
14Varpa_32723524668..3526023 [-], 1356319793928type VI secretion protein  TssK
15Varpa_32733526056..3526613 [-], 558319793929type VI secretion lipoprotein  TssJ
16Varpa_32743526735..3527220 [-], 486319793930type VI secretion system effector, hcp1 family  TssD
17Varpa_32753527356..3528858 [-], 1503319793931EvpB family type VI secretion protein  TssC
18Varpa_32763528880..3529425 [-], 546319793932type VI secretion protein  TssB
19Varpa_32773529484..3532189 [-], 2706319793933type VI secretion ATPase, clpv1 family  TssH
20Varpa_32783532555..3533814 [-], 1260319793934isocitrate dehydrogenase, NADP-dependent 
21Varpa_32793534033..3534356 [+], 324319793935tola protein 
22Varpa_32803534450..3534692 [+], 243319793936hypothetical protein 
23Varpa_32813534785..3535252 [+], 468319793937hypothetical protein 
24Varpa_32823535321..3535902 [-], 582319793938superoxide dismutase 
 
flank Genes in the 5-kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any. In the 'Note' column,if available, '(e)' denotes effector while '(i)' for immunity protein

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Proteins        Genes

V. Investigation of the genomic context of the T6SS gene cluster.
1. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the mobile genetic elements database, ACLAME.
 






2. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the virulence factor database, VFDB.
 






3. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against against the antibiotic resistance database, ARDB.
 






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