SecReT6
I. Summary
SecReT6 ID421 insolico
StrainVibrio vulnificus MO6-24/O
Repliconchromosome II [Browse all T6SS(s) in this replicon]
AccessionNC_014966
Location1061250..1083312
Comment
FunctionN/A
T6SS TypeType i; subtype i5
insolico Bioinformatics investigation has been performed on this T6SS.

II. T6SS components
ComponentTssHTssDTssLTssITssATssBTssCTssETssF
Number111111211
ComponentTssGTssJTssKTssM
Number1111
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III. genome coordinates of the T6SS gene cluster
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProductNote
1VVMO6_038971060041..1060949 [-], 909320158744NAD/NADP transhydrogenase subunit beta 
2VVMO6_038981061250..1063085 [-], 1836320158745VgrG protein  TssI
3VVMO6_038991063140..1063619 [-], 480320158746hypothetical protein  TssD
4VVMO6_039001063835..1066399 [-], 2565320158747ClpB protein  TssH
5VVMO6_039011066413..1067414 [-], 1002320158748hypothetical protein  TssG
6VVMO6_039021067378..1069204 [-], 1827320158749protein ImpG/VasA  TssF
7VVMO6_039031069201..1069644 [-], 444320158750hypothetical protein  TssE
8VVMO6_039041069671..1070474 [-], 804320158751protein of avirulence locus ImpE  TagJ
9VVMO6_039051070485..1071978 [-], 1494320158752hypothetical protein  TssC
10VVMO6_039061072023..1073516 [-], 1494320158753hypothetical protein  TssC
11VVMO6_039071073528..1074040 [-], 513320158754hypothetical protein  TssB
12VVMO6_039081074057..1075190 [-], 1134320158755serine/threonine protein phosphatase  TssA
13VVMO6_039091075190..1075984 [-], 795320158756serine/threonine protein phosphatase 
14VVMO6_039101075995..1076690 [-], 696320158757protein phosphatase ImpM 
15VVMO6_039111076672..1080187 [-], 3516320158758icmF-related protein  TssM
16VVMO6_039121080174..1081502 [-], 1329320158759outer membrane protein ImpK/VasF, OmpA/MotB domain  TssL
17VVMO6_039131081511..1082833 [-], 1323320158760hypothetical protein  TssK
18VVMO6_039141082857..1083312 [-], 456320158761type VI secretion lipoprotein/VasD  TssJ
19VVMO6_039151083313..1084524 [-], 1212320158762hypothetical protein  Fha
20VVMO6_039161084840..1087008 [+], 2169320158763serine/threonine protein kinase 
21VVMO6_039171087072..1087689 [-], 618320158764glutathione S-transferase 
 
flank Genes in the 5-kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any. In the 'Note' column,if available, '(e)' denotes effector while '(i)' for immunity protein

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Proteins        Genes

V. Investigation of the genomic context of the T6SS gene cluster.
1. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the mobile genetic elements database, ACLAME.
 






2. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the virulence factor database, VFDB.
 






3. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against against the antibiotic resistance database, ARDB.
 







Homology Effector list
VPA1027

Effector identified
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProduct  Homolog
1VVMO6_038991063140..1063619 [-], 480320158746hypothetical protein VPA1027

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Proteins        Genes
N/A
N/A