SecReT6
I. Summary
SecReT6 ID423 insolico
StrainRahnella sp. Y9602
Repliconplasmid pRAHAQ01 [Browse all T6SS(s) in this replicon]
AccessionNC_015062
Location367893..383016
Comment
FunctionN/A
insolico Bioinformatics investigation has been performed on this T6SS.

II. T6SS components
ComponentTssHTssDTssLTssITssATssBTssCTssETssF
Number000100001
ComponentTssGTssJTssKTssM
Number1101
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III. genome coordinates of the T6SS gene cluster
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProductNote
1Rahaq_4794364252..365313 [+], 1062322835474binding-protein-dependent transport systems inner membrane component 
2Rahaq_4795365310..366215 [+], 906322835475binding-protein-dependent transport systems inner membrane component 
3Rahaq_4796366187..367053 [+], 867322835476ABC transporter 
4Rahaq_4797367063..367848 [+], 786322835477ABC transporter 
5Rahaq_4798367893..368978 [-], 1086322835478type VI secretion protein, VC_A0111 family  TssG
6Rahaq_4799368942..370717 [-], 1776322835479type VI secretion protein, VC_A0110 family  TssF
7Rahaq_4800370717..371250 [-], 534322835480type VI secretion lipoprotein, VC_A0113 family  TssJ
8Rahaq_4801371237..374605 [-], 3369322835481ImcF domain protein  TssM
9Rahaq_4802374598..376010 [-], 1413322835482hypothetical protein 
10Rahaq_4803376010..376264 [-], 255322835483hypothetical protein  PAAR
11Rahaq_4804376288..376758 [-], 471322835484hypothetical protein 
12Rahaq_4805376768..377517 [-], 750322835485Sel1 domain protein repeat-containing protein 
13Rahaq_4806377584..378333 [-], 750322835486hypothetical protein 
14Rahaq_4807378344..380506 [-], 2163322835487hypothetical protein 
15Rahaq_4808380509..383016 [-], 2508322835488Rhs element Vgr protein  TssI
16Rahaq_4809383451..384431 [+], 981322835489MarR family transcriptional regulator 
17Rahaq_4810384448..386235 [-], 1788322835490binding-protein-dependent transport systems inner membrane component 
18Rahaq_4811386235..387743 [-], 1509322835491extracellular solute-binding protein family 5 
 
flank Genes in the 5-kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any. In the 'Note' column,if available, '(e)' denotes effector while '(i)' for immunity protein

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Proteins        Genes

V. Investigation of the genomic context of the T6SS gene cluster.
1. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the mobile genetic elements database, ACLAME.
 






2. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the virulence factor database, VFDB.
 






3. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against against the antibiotic resistance database, ARDB.
 







Homology Effector list
EC042_4529

Effector identified
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProduct  Homolog
1Rahaq_4635203988..204470 [+], 483322835316type VI secretion system effector, Hcp1 family EC042_4529

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Proteins        Genes
N/A
N/A