SecReT6
I. Summary
SecReT6 ID424 insolico
StrainRahnella sp. Y9602
Repliconplasmid pRAHAQ01 [Browse all T6SS(s) in this replicon]
AccessionNC_015062
Location503886..522056
Comment
FunctionN/A
T6SS TypeType i; subtype i4b
insolico Bioinformatics investigation has been performed on this T6SS.

II. T6SS components
ComponentTssHTssDTssLTssITssATssBTssCTssETssF
Number111111111
ComponentTssGTssJTssKTssM
Number1111
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III. genome coordinates of the T6SS gene cluster
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProductNote
1Rahaq_4913499078..500160 [-], 1083322835589glycosyl transferase family 9 
2Rahaq_4914500238..501257 [-], 1020322835590glycosyl transferase family 9 
3Rahaq_4915501609..502580 [+], 972322835591LysR family transcriptional regulator 
4Rahaq_4916502585..503160 [-], 576322835592hypothetical protein 
5Rahaq_4917503886..504365 [+], 480322835593type VI secretion protein, VC_A0107 family  TssB
6Rahaq_4918504362..505843 [+], 1482322835594type VI secretion protein, EvpB/VC_A0108 family  TssC
7Rahaq_4919505873..506364 [+], 492322835595hypothetical protein  TssD
8Rahaq_4920506417..506833 [+], 417322835596GPW/gp25 family protein  TssE
9Rahaq_4921506846..508648 [+], 1803322835597type VI secretion protein, VC_A0110 family  TssF
10Rahaq_4922508639..509586 [+], 948322835598type VI secretion protein, VC_A0111 family  TssG
11Rahaq_4923509590..511503 [+], 1914322835599type VI secretion system Vgr family protein  TssI
12Rahaq_4924511517..512032 [+], 516322835600hypothetical protein 
13Rahaq_4925512032..512331 [+], 300322835601PAAR repeat-containing protein  PAAR
14Rahaq_4926512343..513407 [+], 1065322835602type VI secretion-associated protein, ImpA family  TssA
15Rahaq_4927513404..513979 [+], 576322835603type VI secretion lipoprotein, VC_A0113 family  TssJ
16Rahaq_4928513979..515373 [+], 1395322835604type VI secretion protein, VC_A0114 family  TssK
17Rahaq_4929515370..515996 [+], 627322835605type IV / VI secretion system, DotU  TssL
18Rahaq_4930516003..519440 [+], 3438322835606hypothetical protein  TssM
19Rahaq_4931519486..522056 [+], 2571322835607type VI secretion ATPase, ClpV1 family  TssH
20Rahaq_4932522077..523426 [+], 1350322835608hypothetical protein 
21Rahaq_4933523465..524178 [+], 714322835609hypothetical protein 
22Rahaq_4934524374..526248 [+], 1875322835610potassium uptake protein 
 
flank Genes in the 5-kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any. In the 'Note' column,if available, '(e)' denotes effector while '(i)' for immunity protein

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Proteins        Genes

V. Investigation of the genomic context of the T6SS gene cluster.
1. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the mobile genetic elements database, ACLAME.
 






2. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the virulence factor database, VFDB.
 






3. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against against the antibiotic resistance database, ARDB.
 






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