SecReT6
I. Summary
SecReT6 ID428 insolico
StrainMarinomonas mediterranea MMB-1
Repliconchromosome [Browse all T6SS(s) in this replicon]
AccessionNC_015276
Location826039..849660
Comment
FunctionN/A
T6SS TypeType i; subtype i5
insolico Bioinformatics investigation has been performed on this T6SS.

II. T6SS components
ComponentTssHTssDTssLTssITssATssBTssCTssETssF
Number111111211
ComponentTssGTssJTssKTssM
Number1111
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III. genome coordinates of the T6SS gene cluster
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProductNote
1Marme_0763821405..821749 [-], 345326794062regulatory protein ArsR 
2Marme_0764822115..822915 [+], 801326794063hypothetical protein 
3Marme_0765822912..825026 [+], 2115326794064major facilitator superfamily protein 
4Marme_0766825023..826042 [+], 1020326794065hypothetical protein 
5Marme_0767826039..828102 [+], 2064326794066ImpA family type VI secretion-associated protein  TssI
6Marme_0768828102..828674 [+], 573326794067hypothetical protein 
7Marme_0769828687..828986 [+], 300326794068PAAR repeat-containing protein  PAAR
8Marme_0770829012..830097 [+], 1086326794069hypothetical protein 
9Marme_0771830124..831506 [+], 1383326794070hypothetical protein  TssA
10Marme_0772831561..832085 [+], 525326794071hypothetical protein  TssD
11Marme_0773832109..832606 [+], 498326794072type VI secretion protein  TssB
12Marme_0774832609..834087 [+], 1479326794073type VI secretion protein EvpB  TssC
13Marme_0775834105..835544 [+], 1440326794074hypothetical protein  TssC
14Marme_0776835541..835960 [+], 420326794075GPW/gp25 family protein  TssE
15Marme_0777835953..837758 [+], 1806326794076type VI secretion protein  TssF
16Marme_0778837749..838738 [+], 990326794077hypothetical protein  TssG
17Marme_0779838738..841359 [+], 2622326794078type VI secretion ATPase, ClpV1 family  TssH
18Marme_0780841370..842092 [+], 723326794079hypothetical protein 
19Marme_0781842162..843184 [+], 1023326794080FHA domain-containing protein  Fha
20Marme_0782843196..843693 [+], 498326794081type VI secretion lipoprotein  TssJ
21Marme_0783843712..845037 [+], 1326326794082type VI secretion protein  TssK
22Marme_0784845053..846246 [+], 1194326794083DotU family type IV / VI secretion system protein  TssL
23Marme_0785846256..849660 [+], 3405326794084ImcF domain-containing protein  TssM
24Marme_0786849657..850505 [+], 849326794085serine/threonine protein kinase 
25Marme_0787850502..851905 [+], 1404326794086integral membrane sensor signal transduction histidine kinase 
26Marme_0788851924..852607 [+], 684326794087transcriptional regulator 
27Marme_0789852732..854081 [+], 1350326794088hypothetical protein 
28Marme_0790854102..854383 [+], 282326794089antibiotic biosynthesis monooxygenase 
 
flank Genes in the 5-kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any. In the 'Note' column,if available, '(e)' denotes effector while '(i)' for immunity protein

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Proteins        Genes

V. Investigation of the genomic context of the T6SS gene cluster.
1. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the mobile genetic elements database, ACLAME.
 






2. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the virulence factor database, VFDB.
 






3. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against against the antibiotic resistance database, ARDB.
 






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