SecReT6
I. Summary
SecReT6 ID429 insolico
StrainMarinomonas mediterranea MMB-1
Repliconchromosome [Browse all T6SS(s) in this replicon]
AccessionNC_015276
Location4043561..4063701
Comment
FunctionN/A
T6SS TypeType i; subtype i2
insolico Bioinformatics investigation has been performed on this T6SS.

II. T6SS components
ComponentTssHTssDTssLTssITssATssBTssCTssETssF
Number111111111
ComponentTssGTssJTssKTssM
Number1111
Click the above image to have a larger view
III. genome coordinates of the T6SS gene cluster
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProductNote
1Marme_36624039897..4040247 [-], 351326796890Hpt domain-containing protein 
2Marme_36634040244..4043429 [-], 3186326796891multi-sensor hybrid histidine kinase 
3Marme_36644043561..4045627 [-], 2067326796892Rhs element Vgr protein  TssI
4Marme_36654045630..4048554 [-], 2925326796893type VI secretion ATPase, ClpV1 family  TssH
5Marme_36664048614..4049603 [-], 990326796894type VI secretion protein  TssG
6Marme_36674049588..4051288 [-], 1701326796895type VI secretion protein  TssF
7Marme_36684051316..4051747 [-], 432326796896type VI secretion system lysozyme-like protein  TssE
8Marme_36694051851..4052336 [-], 486326796897type VI secretion system effector  TssD
9Marme_36704052513..4054036 [-], 1524326796898type VI secretion protein EvpB  TssC
10Marme_36714054036..4054557 [-], 522326796899type VI secretion protein  TssB
11Marme_36724054614..4056176 [-], 1563326796900ImpA domain-containing protein  TssA
12Marme_36734056173..4057228 [-], 1056326796901type VI secretion system-associated protein 
13Marme_36744057228..4060980 [-], 3753326796902type VI secretion protein IcmF  TssM
14Marme_36754061006..4061779 [-], 774326796903DotU family type IV / VI secretion system protein  TssL
15Marme_36764061784..4063121 [-], 1338326796904type VI secretion protein  TssK
16Marme_36774063243..4063701 [-], 459326796905type VI secretion lipoprotein  TssJ
17Marme_36794064103..4064507 [-], 405326796906hypothetical protein 
18Marme_36804064672..4064785 [-], 114326796907hypothetical protein 
19Marme_36814065180..4065452 [+], 273326796908transcriptional activator Ogr/delta 
20Marme_36824065492..4066169 [+], 678326796909hypothetical protein 
21Marme_36834066370..4067233 [+], 864326796910hypothetical protein 
22Marme_36844067272..4067895 [+], 624326796911hypothetical protein 
23Marme_36854067905..4068309 [+], 405326796912hypothetical protein 
24Marme_36864068368..4068517 [-], 150326796913hypothetical protein 
 
flank Genes in the 5-kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any. In the 'Note' column,if available, '(e)' denotes effector while '(i)' for immunity protein

Download FASTA format files
Proteins        Genes

V. Investigation of the genomic context of the T6SS gene cluster.
1. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the mobile genetic elements database, ACLAME.
 






2. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the virulence factor database, VFDB.
 






3. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against against the antibiotic resistance database, ARDB.
 






N/A
N/A
N/A