SecReT6
I. Summary
SecReT6 ID430 insolico
StrainBurkholderia gladioli BSR3
Repliconchromosome II [Browse all T6SS(s) in this replicon]
AccessionNC_015376
Location488136..518953
Comment
FunctionN/A
T6SS TypeType i; subtype i3
insolico Bioinformatics investigation has been performed on this T6SS.

II. T6SS components
ComponentTssHTssDTssLTssITssATssBTssCTssETssF
Number111111111
ComponentTssGTssJTssKTssM
Number1011
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III. genome coordinates of the T6SS gene cluster
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProductNote
1bgla_2g03850484392..485831 [-], 1440330819511serine/threonine protein kinase 
2bgla_2g03860485828..486748 [-], 921330819512sensor protein 
3bgla_2g03870486745..487716 [-], 972330819513hypothetical protein 
4bgla_2g03880488136..488657 [+], 522330819514hypothetical protein  TssB
5bgla_2g03890488657..490159 [+], 1503330819515type VI secretion protein, EvpB/VC_A0108 family  TssC
6bgla_2g03900490281..490784 [+], 504330819516hypothetical protein  TssD
7bgla_2g03910490859..491680 [+], 822330819517hypothetical protein  TagJ
8bgla_2g03920491694..492197 [+], 504330819518type VI secretion system lysozyme-related protein  TssE
9bgla_2g03930492204..494093 [+], 1890330819519hypothetical protein  TssF
10bgla_2g03940494057..495073 [+], 1017330819520hypothetical protein  TssG
11bgla_2g03950495159..498026 [+], 2868330819521type VI secretion ATPase, ClpV1 family  TssH
12bgla_2g03960498143..499141 [+], 999330819522hypothetical protein 
13bgla_2g03970499231..500604 [+], 1374330819523hypothetical protein 
14bgla_2g03980501061..502947 [+], 1887330819524rhs-family protein  TssI
15bgla_2g03990502944..503492 [+], 549330819525putative secreted protein 
16bgla_2g04000503489..505636 [+], 2148330819526FHA domain containing protein  Fha
17bgla_2g04010505705..507042 [+], 1338330819527hypothetical protein  TssK
18bgla_2g04020507039..508448 [+], 1410330819528type IV / VI secretion system protein, DotU family  TssL
19bgla_2g04030508453..512049 [+], 3597330819529hypothetical protein  TssM
20bgla_2g04040512046..513686 [+], 1641330819530hypothetical protein 
21bgla_2g04050513683..514405 [+], 723330819531protein serine/threonine phosphatase 
22bgla_2g04060514416..517283 [+], 2868330819532serine/threonine protein kinase 
23bgla_2g04070517430..517834 [+], 405330819533hypothetical protein 
24bgla_2g04080517880..518953 [-], 1074330819534type VI secretion-associated protein, ImpA family  TssA
25bgla_2g04090519413..519964 [+], 552330819535RNA polymerase, sigma-24 subunit, ECF subfamily 
26bgla_2g04100519961..520914 [+], 954330819536putative transmembrane anti-sigma factor 
27bgla_2g04110521035..522102 [+], 1068330819537putative catalase 
28bgla_2g04120522368..523279 [+], 912330819538putative transmembrane anti-sigma factor 
 
flank Genes in the 5-kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any. In the 'Note' column,if available, '(e)' denotes effector while '(i)' for immunity protein

Download FASTA format files
Proteins        Genes

V. Investigation of the genomic context of the T6SS gene cluster.
1. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the mobile genetic elements database, ACLAME.
 






2. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the virulence factor database, VFDB.
 






3. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against against the antibiotic resistance database, ARDB.
 






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