SecReT6
I. Summary
SecReT6 ID432 insolico
StrainPseudomonas brassicacearum subsp. brassicacearum NFM421
Repliconchromosome [Browse all T6SS(s) in this replicon]
AccessionNC_015379
Location6692399..6714079
Comment
FunctionN/A
T6SS TypeType i; subtype i3
insolico Bioinformatics investigation has been performed on this T6SS.

II. T6SS components
ComponentTssHTssDTssLTssITssATssBTssCTssETssF
Number111111111
ComponentTssGTssJTssKTssM
Number1111
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III. genome coordinates of the T6SS gene cluster
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProductNote
1PSEBR_a55496687922..6691020 [-], 3099330812621serine/threonine protein kinase  PpkA
2PSEBR_a55506691017..6691748 [-], 732330812622phosphatase  PppA
3PSEBR_a55516691749..6692402 [-], 654330812623hypothetical protein  TagF
4PSEBR_a55526692399..6695899 [-], 3501330812624hypothetical protein  TssM
5PSEBR_a55536695896..6697206 [-], 1311330812625hypothetical protein  TssL
6PSEBR_a55546697213..6698547 [-], 1335330812626hypothetical protein  TssK
7PSEBR_a55556698563..6699069 [-], 507330812627hypothetical protein  TssJ
8PSEBR_a55566699138..6700679 [-], 1542330812628hypothetical protein  Fha
9PSEBR_a55576701094..6702131 [+], 1038330812629hypothetical protein  TssA
10PSEBR_a55586702213..6702719 [+], 507330812630hypothetical protein  TssB
11PSEBR_a55596702716..6704218 [+], 1503330812631hypothetical protein  TssC
12PSEBR_a55606704439..6704927 [+], 489330812632hemolysin co-regulated type VI secretion system effector  TssD
13PSEBR_a55616705009..6705464 [+], 456330812633hypothetical protein 
14PSEBR_a55626705461..6705910 [+], 450330812634hypothetical protein 
15PSEBR_a55636705904..6706416 [+], 513330812635hypothetical protein  TssE
16PSEBR_a55646706413..6708272 [+], 1860330812636hypothetical protein  TssF
17PSEBR_a55656708287..6709288 [+], 1002330812637hypothetical protein  TssG
18PSEBR_a55666709281..6711971 [+], 2691330812638chaperone  TssH
19PSEBR_a55676712142..6714079 [+], 1938330812639type VI secretion system, Vgr family  TssI
20PSEBR_a55686714098..6714532 [+], 435330812640hypothetical protein 
21PSEBR_a55696714545..6718984 [+], 4440330812641hypothetical protein  PAAR
 
flank Genes in the 5-kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any. In the 'Note' column,if available, '(e)' denotes effector while '(i)' for immunity protein

Download FASTA format files
Proteins        Genes

V. Investigation of the genomic context of the T6SS gene cluster.
1. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the mobile genetic elements database, ACLAME.
 






2. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the virulence factor database, VFDB.
 






3. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against against the antibiotic resistance database, ARDB.
 







Homology Effector list
PA0085 , PA0091

Effector identified
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProduct  Homolog
1PSEBR_a55606704439..6704927 [+], 489330812632hemolysin co-regulated type VI secretion system effector PA0085
2PSEBR_a55676712142..6714079 [+], 1938330812639type VI secretion system, Vgr family PA0091

Download FASTA format files
Proteins        Genes
N/A
Regulatory element identified
GacS/GacA
RegulatorDescriptionReference
GacS/GacAActivatorPMID: 22247157

(1) Lalaouna D et al. (2012). Phenotypic switching in Pseudomonas brassicacearum involves GacS- and GacA-dependent Rsm small RNAs. Appl Environ Microbiol. 78(6):1658-65. [PudMed:22247157] experimental
(2) Ortet P et al. (2011). Complete genome sequence of a beneficial plant root-associated bacterium, Pseudomonas brassicacearum. J Bacteriol. 193(12):3146. [PudMed:21515771] in_silico
 
experimental This literature contains experimental investigation
in_silico This literature contains bioinformatics investigation