SecReT6
I. Summary
SecReT6 ID434 insolico
StrainBurkholderia gladioli BSR3
Repliconplasmid bgla_4p [Browse all T6SS(s) in this replicon]
AccessionNC_015383
Location244508..268297
Comment
FunctionN/A
T6SS TypeType i; subtype i3
insolico Bioinformatics investigation has been performed on this T6SS.

II. T6SS components
ComponentTssHTssDTssLTssITssATssBTssCTssETssF
Number112111111
ComponentTssGTssJTssKTssM
Number1111
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III. genome coordinates of the T6SS gene cluster
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProductNote
1bgla_4p2310239796..244460 [-], 4665330814650RHS family protein 
2bgla_4p2320244508..247243 [-], 2736330814651type VI secretion system Vgr family protein  TssI
3bgla_4p2330247263..247556 [-], 294330814652PAAR repeat-containing protein  PAAR
4bgla_4p2340247556..248821 [-], 1266330814653OmpA/MotB domain protein  TssL
5bgla_4p2350248838..252908 [-], 4071330814654ImcF domain-containing protein  TssM
6bgla_4p2360252934..254196 [-], 1263330814655type VI secretion system OmpA/MotB family protein  TssL
7bgla_4p2370254248..255594 [-], 1347330814656type VI secretion protein, family  TssK
8bgla_4p2380255626..256207 [-], 582330814657type VI secretion lipoprotein, family  TssJ
9bgla_4p2390256212..256697 [-], 486330814658type VI secretion system effector, Hcp1 family  TssD
10bgla_4p2400256786..258279 [-], 1494330814659type VI secretion protein, EvpB/family  TssC
11bgla_4p2410258307..258849 [-], 543330814660type VI secretion protein, family  TssB
12bgla_4p2420258889..261570 [-], 2682330814661ATPase  TssH
13bgla_4p2430262058..262780 [+], 723330814662hypothetical protein 
14bgla_4p2440262777..263628 [+], 852330814663virulence protein, SciE type  TagJ
15bgla_4p2450263621..264181 [+], 561330814664hypothetical protein  TssE
16bgla_4p2460264220..266109 [+], 1890330814665hypothetical protein  TssF
17bgla_4p2470266109..267176 [+], 1068330814666type VI secretion protein, VC_A0111 family  TssG
18bgla_4p2480267179..268297 [+], 1119330814667ImpA-like protein  TssA
19bgla_4p2500269464..272400 [-], 2937330814668transposase Tn3 
 
flank Genes in the 5-kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any. In the 'Note' column,if available, '(e)' denotes effector while '(i)' for immunity protein

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Proteins        Genes

V. Investigation of the genomic context of the T6SS gene cluster.
1. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the mobile genetic elements database, ACLAME.
 






2. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the virulence factor database, VFDB.
 






3. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against against the antibiotic resistance database, ARDB.
 







Homology Effector list
SciK

Effector identified
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProduct  Homolog
1bgla_4p2390256212..256697 [-], 486330814658type VI secretion system effector, Hcp1 family SciK

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Proteins        Genes
N/A
N/A