SecReT6
I. Summary
SecReT6 ID435 insolico
StrainPseudomonas mendocina NK-01
Repliconchromosome [Browse all T6SS(s) in this replicon]
AccessionNC_015410
Location16939..38254
Comment
FunctionN/A
T6SS TypeType i; subtype i3
insolico Bioinformatics investigation has been performed on this T6SS.

II. T6SS components
ComponentTssHTssDTssLTssITssATssBTssCTssETssF
Number111111111
ComponentTssGTssJTssKTssM
Number1111
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III. genome coordinates of the T6SS gene cluster
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProductNote
1MDS_001112538..15564 [-], 3027330500925PpkA-like protein  PpkA
2MDS_001215555..16292 [-], 738330500926Ser/Thr protein phosphatase  PppA
3MDS_001316289..16936 [-], 648330500927hypothetical protein  TagF
4MDS_001416939..20439 [-], 3501330500928hypothetical protein  TssM
5MDS_001520436..21767 [-], 1332330500929hypothetical protein  TssL
6MDS_001621771..23105 [-], 1335330500930hypothetical protein  TssK
7MDS_001723117..23641 [-], 525330500931hypothetical protein  TssJ
8MDS_001823656..25065 [-], 1410330500932hypothetical protein  Fha
9MDS_001925446..26465 [+], 1020330500933hypothetical protein  TssA
10MDS_002026557..27072 [+], 516330500934hypothetical protein  TssB
11MDS_002127087..28580 [+], 1494330500935hypothetical protein  TssC
12MDS_002228721..29209 [+], 489330500936hypothetical protein  TssD
13MDS_002329290..29748 [+], 459330500937hypothetical protein 
14MDS_002429745..30194 [+], 450330500938hypothetical protein 
15MDS_002530203..30718 [+], 516330500939hypothetical protein  TssE
16MDS_002630715..32574 [+], 1860330500940hypothetical protein  TssF
17MDS_002732538..33590 [+], 1053330500941hypothetical protein  TssG
18MDS_002833583..36255 [+], 2673330500942chaperone  TssH
19MDS_002936314..38254 [+], 1941330500943rhs family protein  TssI
20MDS_003038254..38682 [+], 429330500944hypothetical protein 
21MDS_003138689..43227 [+], 4539330500945hypothetical protein  PAAR
 
flank Genes in the 5-kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any. In the 'Note' column,if available, '(e)' denotes effector while '(i)' for immunity protein

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Proteins        Genes

V. Investigation of the genomic context of the T6SS gene cluster.
1. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the mobile genetic elements database, ACLAME.
 






2. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the virulence factor database, VFDB.
 






3. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against against the antibiotic resistance database, ARDB.
 







Homology Effector list
PA0085 , PA0091

Effector identified
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProduct  Homolog
1MDS_002228721..29209 [+], 489330500936hypothetical protein PA0085
2MDS_002936314..38254 [+], 1941330500943rhs family protein PA0091

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Proteins        Genes
N/A
N/A