SecReT6
I. Summary
SecReT6 ID437 insolico
StrainPusillimonas sp. T7-7
Repliconchromosome [Browse all T6SS(s) in this replicon]
AccessionNC_015458
Location2480322..2504248
Comment
FunctionN/A
T6SS TypeType i; subtype i1
insolico Bioinformatics investigation has been performed on this T6SS.

II. T6SS components
ComponentTssHTssDTssLTssITssATssBTssCTssETssF
Number111111111
ComponentTssGTssJTssKTssM
Number1111
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III. genome coordinates of the T6SS gene cluster
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProductNote
1PT7_23222476394..2477812 [-], 1419332285575hypothetical protein 
2PT7_23232477920..2478843 [-], 924332285576LysR family transcriptional regulator 
3PT7_23242478994..2479278 [+], 285332285577hypothetical protein 
4PT7_23252479360..2480325 [+], 966332285578D-isomer specific 2-hydroxyacid dehydrogenase 
5PT7_23262480322..2484266 [-], 3945332285579hypothetical protein  TssM
6PT7_23272484271..2484942 [-], 672332285580hypothetical protein  TssL
7PT7_23282484947..2486344 [-], 1398332285581hypothetical protein  TssK
8PT7_23292486341..2487048 [-], 708332285582hypothetical protein  TssJ
9PT7_23302487057..2487461 [-], 405332285583hypothetical protein 
10PT7_23312487472..2488071 [-], 600332285584hypothetical protein 
11PT7_23322488089..2489036 [-], 948332285585hypothetical protein 
12PT7_23332489029..2491671 [-], 2643332285586hypothetical protein 
13PT7_23342491681..2494176 [-], 2496332285587hypothetical protein  TssI
14PT7_23352494173..2496845 [-], 2673332285588ATPase AAA  TssH
15PT7_23362496842..2497882 [-], 1041332285589hypothetical protein  TssG
16PT7_23372497846..2499570 [-], 1725332285590hypothetical protein  TssF
17PT7_23382499575..2499940 [-], 366332285591hypothetical protein  TssE
18PT7_23392500042..2500434 [-], 393332285592hypothetical protein  TssD
19PT7_23402500628..2502115 [-], 1488332285593hypothetical protein  TssC
20PT7_23412502121..2502639 [-], 519332285594hypothetical protein  TssB
21PT7_23422502665..2504248 [-], 1584332285595hypothetical protein  TssA
22PT7_23432504584..2508087 [+], 3504332285596hypothetical protein 
23PT7_23442508107..2508262 [+], 156332285597hypothetical protein 
24PT7_23452508391..2509029 [+], 639332285598hypothetical protein 
 
flank Genes in the 5-kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any. In the 'Note' column,if available, '(e)' denotes effector while '(i)' for immunity protein

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Proteins        Genes

V. Investigation of the genomic context of the T6SS gene cluster.
1. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the mobile genetic elements database, ACLAME.
 






2. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the virulence factor database, VFDB.
 






3. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against against the antibiotic resistance database, ARDB.
 






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