SecReT6
I. Summary
SecReT6 ID438 insolico
StrainAgrobacterium sp. H13-3
Repliconchromosome linear [Browse all T6SS(s) in this replicon]
AccessionNC_015508
Location35723..58616
Comment
FunctionN/A
T6SS TypeType i; subtype i5
insolico Bioinformatics investigation has been performed on this T6SS.

II. T6SS components
ComponentTssHTssDTssLTssITssATssBTssCTssETssF
Number111111211
ComponentTssGTssJTssKTssM
Number1011
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III. genome coordinates of the T6SS gene cluster
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProductNote
1AGROH133_0936031138..31587 [-], 450332715405hypothetical protein 
2AGROH133_0936131590..32138 [-], 549332715406hypothetical protein 
3AGROH133_0936432135..33412 [-], 1278332715407hypothetical protein 
4AGROH133_0936533354..33731 [-], 378332715408phospholipase  PAAR
5AGROH133_0936633748..34281 [-], 534332715409hypothetical protein 
6AGROH133_0936734288..35412 [-], 1125332715410hypothetical protein 
7AGROH133_0936835596..35751 [+], 156332715411hypothetical protein 
8AGROH133_0936935723..37876 [-], 2154332715412vgrG protein  TssI
9AGROH133_0937037890..38390 [-], 501332715413hypothetical protein  Tae (e)
10AGROH133_0937138402..38791 [-], 390332715414hypothetical protein  Tai (i)
11AGROH133_0937338900..39376 [-], 477332715415hypothetical protein  TssD
12AGROH133_0937439434..42103 [-], 2670332715416ATP-dependent Clp protease, ATP-binding subunit  TssH
13AGROH133_0937542324..43379 [+], 1056332715417hypothetical protein  TssA
14AGROH133_0937643445..43954 [+], 510332715418hypothetical protein  TssB
15AGROH133_0937744051..45532 [+], 1482332715419hypothetical protein  TssC
16AGROH133_0937845588..46982 [+], 1395332715420hypothetical protein  TssC
17AGROH133_0937946979..47800 [+], 822332715421hypothetical protein  TagJ
18AGROH133_0938047793..48302 [+], 510332715422hypothetical protein  TssE
19AGROH133_0938148295..50076 [+], 1782332715423hypothetical protein  TssF
20AGROH133_0938250086..51090 [+], 1005332715424hypothetical protein  TssG
21AGROH133_0938351097..52302 [+], 1206332715425putative forkhead-type phosphopeptide-binding protein  Fha
22AGROH133_0938452292..53632 [+], 1341332715426hypothetical protein  TssK
23AGROH133_0938553629..55140 [+], 1512332715427OmpA-like porin  TssL
24AGROH133_0938755137..58616 [+], 3480332715428IcmF family protein  TssM
25AGROH133_0939158699..60111 [+], 1413332715429serine/threonine phosphoprotein phosphatase  TagF-PppA
26AGROH133_0939260101..60988 [+], 888332715430Serine/threonine protein kinase  PpkA
27AGROH133_0939361000..62136 [-], 1137332715431polysaccharide export protein 
28AGROH133_0939562441..62857 [-], 417332715432hypothetical protein 
29AGROH133_0939662866..63255 [-], 390332715433hypothetical protein 
 
flank Genes in the 5-kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any. In the 'Note' column,if available, '(e)' denotes effector while '(i)' for immunity protein

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Proteins        Genes

V. Investigation of the genomic context of the T6SS gene cluster.
1. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the mobile genetic elements database, ACLAME.
 






2. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the virulence factor database, VFDB.
 






3. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against against the antibiotic resistance database, ARDB.
 







Homology Effector list
RbsB , Atu4347, Atu4345

Effector identified
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProduct  Homolog
1AGROH133_15080472110..473039 [+], 930325168809ribose ABC transporter substrate-binding protein RbsB
2AGROH133_0937037890..38390 [-], 501332715413hypothetical protein Atu4347
3AGROH133_0937338900..39376 [-], 477332715415hypothetical protein Atu4345

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Proteins        Genes

Homology Immunity protein list
Atu4346

Immunity protein identified
#Locus tag(Gene)Coordinates [+/-], size (bp)Protein GIProduct  Homolog
1AGROH133_0937138402..38791 [-], 390332715414hypothetical protein Atu4346

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Proteins        Genes
N/A