SecReT6
I. Summary
SecReT6 ID439 insolico
StrainPseudomonas fulva 12-X
Repliconchromosome [Browse all T6SS(s) in this replicon]
AccessionNC_015556
Location274038..295723
Comment
FunctionN/A
T6SS TypeType i; subtype i3
insolico Bioinformatics investigation has been performed on this T6SS.

II. T6SS components
ComponentTssHTssDTssLTssITssATssBTssCTssETssF
Number111111111
ComponentTssGTssJTssKTssM
Number1111
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III. genome coordinates of the T6SS gene cluster
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProductNote
1Psefu_0237269149..269568 [-], 420333898443hypothetical protein 
2Psefu_0238269662..270750 [+], 1089333898444aminopeptidase 
3Psefu_0239270784..271038 [+], 255333898445hypothetical protein 
4Psefu_0240271058..271705 [-], 648333898446HAD-superfamily hydrolase 
5Psefu_0241271769..272731 [-], 963333898447hypothetical protein 
6Psefu_0242272798..273346 [-], 549333898448hypothetical protein 
7Psefu_0244274038..276110 [-], 2073333898449ImpA family type VI secretion-associated protein  TssI
8Psefu_0245276124..278826 [-], 2703333898450type VI secretion ATPase, ClpV1 family  TssH
9Psefu_0246278838..279851 [-], 1014333898451type VI secretion protein  TssG
10Psefu_0247279833..281692 [-], 1860333898452type VI secretion protein  TssF
11Psefu_0248281689..282204 [-], 516333898453type VI secretion system lysozyme-like protein  TssE
12Psefu_0249282192..282992 [-], 801333898454virulence protein SciE type  TagJ
13Psefu_0250283155..283643 [-], 489333898455type VI secretion system effector  TssD
14Psefu_0251283717..285210 [-], 1494333898456type VI secretion protein EvpB  TssC
15Psefu_0252285223..285741 [-], 519333898457type VI secretion protein  TssB
16Psefu_0253286003..287043 [-], 1041333898458type VI secretion-associated protein, ImpA family  TssA
17Psefu_0254287403..288983 [+], 1581333898459FHA domain-containing protein  Fha
18Psefu_0255289039..289506 [+], 468333898460type VI secretion lipoprotein  TssJ
19Psefu_0256289521..290855 [+], 1335333898461type VI secretion protein  TssK
20Psefu_0257290862..292208 [+], 1347333898462DotU family type IV / VI secretion system protein  TssL
21Psefu_0258292205..295723 [+], 3519333898463type VI secretion protein IcmF  TssM
22Psefu_0259295720..296379 [+], 660333898464type VI secretion system-associated protein  TagF
23Psefu_0260296376..297104 [+], 729333898465Ser/Thr phosphatase  PppA
24Psefu_0261297189..300221 [+], 3033333898466serine/threonine protein kinase  PpkA
 
flank Genes in the 5-kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any. In the 'Note' column,if available, '(e)' denotes effector while '(i)' for immunity protein

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Proteins        Genes

V. Investigation of the genomic context of the T6SS gene cluster.
1. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the mobile genetic elements database, ACLAME.
 






2. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the virulence factor database, VFDB.
 






3. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against against the antibiotic resistance database, ARDB.
 







Homology Effector list
PA2685 , PA0085, PA0095

Effector identified
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProduct  Homolog
1Psefu_0244274038..276110 [-], 2073333898449ImpA family type VI secretion-associated protein PA2685
2Psefu_0250283155..283643 [-], 489333898455type VI secretion system effector PA0085
3Psefu_43684768783..4771008 [+], 2226333902541ImpA family type VI secretion-associated protein PA0095

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Proteins        Genes
N/A
N/A