SecReT6
I. Summary
SecReT6 ID440 insolico
StrainMarinomonas posidonica IVIA-Po-181
Repliconchromosome [Browse all T6SS(s) in this replicon]
AccessionNC_015559
Location708321..731775
Comment
FunctionN/A
T6SS TypeType i; subtype i5
insolico Bioinformatics investigation has been performed on this T6SS.

II. T6SS components
ComponentTssHTssDTssLTssITssATssBTssCTssETssF
Number111111211
ComponentTssGTssJTssKTssM
Number1111
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III. genome coordinates of the T6SS gene cluster
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProductNote
1Mar181_0646704350..705147 [+], 798333907035hypothetical protein 
2Mar181_0647705140..707272 [+], 2133333907036major facilitator superfamily protein 
3Mar181_0648707269..708279 [+], 1011333907037hypothetical protein 
4Mar181_0649708321..710384 [+], 2064333907038ImpA family type VI secretion-associated protein  TssI
5Mar181_0650710385..710972 [+], 588333907039hypothetical protein 
6Mar181_0651710972..711271 [+], 300333907040PAAR repeat-containing protein  PAAR
7Mar181_0652711298..712419 [+], 1122333907041hypothetical protein 
8Mar181_0653712443..713726 [+], 1284333907042hypothetical protein  TssA
9Mar181_0654713783..714307 [+], 525333907043hypothetical protein  TssD
10Mar181_0655714336..714839 [+], 504333907044type VI secretion lipoprotein  TssB
11Mar181_0656714839..716317 [+], 1479333907045type VI secretion lipoprotein  TssC
12Mar181_0657716367..717794 [+], 1428333907046hypothetical protein  TssC
13Mar181_0658717791..718213 [+], 423333907047GPW/gp25 family protein  TssE
14Mar181_0659718206..719984 [+], 1779333907048type VI secretion lipoprotein  TssF
15Mar181_0660719975..720955 [+], 981333907049hypothetical protein  TssG
16Mar181_0661720943..723552 [+], 2610333907050type VI secretion ATPase, ClpV1 family  TssH
17Mar181_0662723555..724277 [+], 723333907051hypothetical protein 
18Mar181_0663724300..725283 [+], 984333907052FHA domain-containing protein  Fha
19Mar181_0664725280..725783 [+], 504333907053type VI secretion lipoprotein  TssJ
20Mar181_0665725767..727128 [+], 1362333907054type VI secretion lipoprotein  TssK
21Mar181_0666727133..728398 [+], 1266333907055DotU family type IV / VI secretion system protein  TssL
22Mar181_0667728401..731775 [+], 3375333907056type VI secretion protein IcmF  TssM
23Mar181_0668731775..732521 [+], 747333907057serine/threonine protein kinase-like protein 
24Mar181_0669732536..734014 [+], 1479333907058integral membrane sensor signal transduction histidine kinase 
25Mar181_0670734018..734713 [+], 696333907059winged helix family two component transcriptional regulator 
26Mar181_0671734856..736427 [+], 1572333907060hypothetical protein 
 
flank Genes in the 5-kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any. In the 'Note' column,if available, '(e)' denotes effector while '(i)' for immunity protein

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Proteins        Genes

V. Investigation of the genomic context of the T6SS gene cluster.
1. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the mobile genetic elements database, ACLAME.
 






2. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the virulence factor database, VFDB.
 






3. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against against the antibiotic resistance database, ARDB.
 






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