SecReT6
I. Summary
SecReT6 ID441 insolico
StrainMarinomonas posidonica IVIA-Po-181
Repliconchromosome [Browse all T6SS(s) in this replicon]
AccessionNC_015559
Location2721990..2753359
Comment
FunctionN/A
T6SS TypeType i; subtype i1
insolico Bioinformatics investigation has been performed on this T6SS.

II. T6SS components
ComponentTssHTssDTssLTssITssATssBTssCTssETssF
Number121311111
ComponentTssGTssJTssKTssM
Number1111
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III. genome coordinates of the T6SS gene cluster
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProductNote
1Mar181_24732717744..2718115 [-], 372333908839hypothetical protein 
2Mar181_24742718112..2718900 [-], 789333908840hypothetical protein 
3Mar181_24752719044..2719928 [-], 885333908841hypothetical protein 
4Mar181_24762719915..2721969 [-], 2055333908842hypothetical protein 
5Mar181_24772721990..2723954 [-], 1965333908843ImpA family type VI secretion-associated protein  TssI
6Mar181_24782724062..2726017 [-], 1956333908844ImpA family type VI secretion-associated protein  TssI
7Mar181_24792726124..2726642 [-], 519333908845type VI secretion system effector  TssD
8Mar181_24802726955..2730503 [-], 3549333908846type VI secretion protein IcmF  TssM
9Mar181_24812730518..2731927 [-], 1410333908847type VI secretion-associated protein  TssA
10Mar181_24822731931..2732560 [-], 630333908848hypothetical protein 
11Mar181_24832732560..2734107 [-], 1548333908849Fis family sigma-54 specific transcriptional regulator 
12Mar181_24842734110..2736704 [-], 2595333908850type VI secretion ATPase, ClpV1 family  TssH
13Mar181_24852736735..2737538 [-], 804333908851DotU family type IV / VI secretion system protein  TssL
14Mar181_24862737541..2738875 [-], 1335333908852type VI secretion lipoprotein  TssK
15Mar181_24872738880..2739383 [-], 504333908853type VI secretion lipoprotein  TssJ
16Mar181_24882739370..2740863 [-], 1494333908854FHA domain-containing protein  Fha
17Mar181_24892740866..2741840 [-], 975333908855type VI secretion lipoprotein  TssG
18Mar181_24902741840..2743609 [-], 1770333908856type VI secretion lipoprotein  TssF
19Mar181_24912743612..2744037 [-], 426333908857type VI secretion system lysozyme-like protein  TssE
20Mar181_24922744060..2745538 [-], 1479333908858type VI secretion lipoprotein  TssC
21Mar181_24932745570..2746085 [-], 516333908859type VI secretion lipoprotein  TssB
22Mar181_24942746160..2747203 [-], 1044333908860hypothetical protein 
23Mar181_24952747962..2750397 [+], 2436333908861ankyrin 
24Mar181_24962750605..2751123 [+], 519333908862type VI secretion system effector  TssD
25Mar181_24972751230..2753359 [+], 2130333908863ImpA family type VI secretion-associated protein  TssI
26Mar181_24982753356..2754303 [+], 948333908864hypothetical protein 
27Mar181_24992754290..2757892 [+], 3603333908865hypothetical protein 
 
flank Genes in the 5-kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any. In the 'Note' column,if available, '(e)' denotes effector while '(i)' for immunity protein

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Proteins        Genes

V. Investigation of the genomic context of the T6SS gene cluster.
1. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the mobile genetic elements database, ACLAME.
 






2. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the virulence factor database, VFDB.
 






3. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against against the antibiotic resistance database, ARDB.
 







Homology Effector list
VCA0017 , VCA0017

Effector identified
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProduct  Homolog
1Mar181_24792726124..2726642 [-], 519333908845type VI secretion system effector VCA0017
2Mar181_24962750605..2751123 [+], 519333908862type VI secretion system effector VCA0017

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Proteins        Genes
N/A
N/A