SecReT6
I. Summary
SecReT6 ID442 insolico
StrainDelftia sp. Cs1-4
Repliconchromosome [Browse all T6SS(s) in this replicon]
AccessionNC_015563
Location3330074..3368284
Comment
FunctionN/A
T6SS TypeType i; subtype i3
insolico Bioinformatics investigation has been performed on this T6SS.

II. T6SS components
ComponentTssHTssDTssLTssITssATssBTssCTssETssF
Number111111111
ComponentTssGTssJTssKTssM
Number1111
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III. genome coordinates of the T6SS gene cluster
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProductNote
1DelCs14_29503325748..3326860 [-], 1113333914580hypothetical protein 
2DelCs14_29513326932..3327408 [-], 477333914581hypothetical protein 
3DelCs14_29523327405..3328388 [-], 984333914582hypothetical protein 
4DelCs14_29533328395..3328754 [-], 360333914583hypothetical protein  PAAR
5DelCs14_29543328747..3330063 [-], 1317333914584hypothetical protein 
6DelCs14_29553330074..3332266 [-], 2193333914585ImpA family type VI secretion-associated protein  TssI
7DelCs14_29563332387..3333484 [-], 1098333914586hypothetical protein 
8DelCs14_29573333498..3334670 [-], 1173333914587hypothetical protein 
9DelCs14_29583334673..3335635 [-], 963333914588hypothetical protein 
10DelCs14_29593335671..3337941 [-], 2271333914589peptidase S41 
11DelCs14_29603337938..3340679 [-], 2742333914590type VI secretion ATPase, ClpV1 family  TssH
12DelCs14_29613340731..3341294 [-], 564333914591hypothetical protein 
13DelCs14_29623341299..3341895 [-], 597333914592hypothetical protein 
14DelCs14_29633341924..3342763 [-], 840333914593hypothetical protein 
15DelCs14_29643342788..3343978 [-], 1191333914594type VI secretion lipoprotein  TssG
16DelCs14_29653343975..3345849 [-], 1875333914595type VI secretion lipoprotein  TssF
17DelCs14_29663345873..3346427 [-], 555333914596type VI secretion system lysozyme-like protein  TssE
18DelCs14_29673346437..3346967 [-], 531333914597hypothetical protein 
19DelCs14_29683346985..3347917 [-], 933333914598hypothetical protein 
20DelCs14_29693347965..3348771 [-], 807333914599virulence protein SciE type  TagJ
21DelCs14_29703348820..3349371 [-], 552333914600hypothetical protein 
22DelCs14_29713349392..3349763 [-], 372333914601putative cytoplasmic protein 
23DelCs14_29723349881..3351374 [-], 1494333914602type VI secretion lipoprotein  TssC
24DelCs14_29733351403..3351945 [-], 543333914603type VI secretion lipoprotein  TssB
25DelCs14_29743352129..3353154 [-], 1026333914604type VI secretion-associated protein, ImpA family  TssA
26DelCs14_29753353212..3353916 [-], 705333914605type VI secretion system-associated protein 
27DelCs14_29763353898..3357554 [-], 3657333914606type VI secretion protein IcmF  TssM
28DelCs14_29773357559..3358890 [-], 1332333914607DotU family type IV / VI secretion system protein  TssL
29DelCs14_29783358912..3360246 [-], 1335333914608type VI secretion lipoprotein  TssK
30DelCs14_29793360264..3360863 [-], 600333914609type VI secretion lipoprotein  TssJ
31DelCs14_29803360883..3361671 [-], 789333914610protein serine/threonine phosphatase 
32DelCs14_29813361668..3363752 [-], 2085333914611FHA domain-containing protein  Fha
33DelCs14_29823363795..3364289 [-], 495333914612hypothetical protein 
34DelCs14_29833364292..3365080 [-], 789333914613PEGA domain-containing protein 
35DelCs14_29843365090..3367186 [-], 2097333914614serine/threonine protein kinase 
36DelCs14_29853367802..3368284 [+], 483333914615hypothetical protein  TssD
37DelCs14_29863369099..3369836 [+], 738333914616GntR family transcriptional regulator 
38DelCs14_29873370060..3370890 [+], 831333914617flagellar hook-associated 2 domain-containing protein 
39DelCs14_29883370932..3372719 [+], 1788333914618methyl-accepting chemotaxis sensory transducer 
40DelCs14_29893372766..3373173 [-], 408333914619hypothetical protein 
 
flank Genes in the 5-kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any. In the 'Note' column,if available, '(e)' denotes effector while '(i)' for immunity protein

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Proteins        Genes

V. Investigation of the genomic context of the T6SS gene cluster.
1. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the mobile genetic elements database, ACLAME.
 






2. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the virulence factor database, VFDB.
 






3. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against against the antibiotic resistance database, ARDB.
 






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