SecReT6
I. Summary
SecReT6 ID444 insolico
StrainMethylomonas methanica MC09
Repliconchromosome [Browse all T6SS(s) in this replicon]
AccessionNC_015572
Location3805083..3816561
Comment
FunctionN/A
insolico Bioinformatics investigation has been performed on this T6SS.

II. T6SS components
ComponentTssHTssDTssLTssITssATssBTssCTssETssF
Number001000000
ComponentTssGTssJTssKTssM
Number0111
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III. genome coordinates of the T6SS gene cluster
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProductNote
1Metme_34393800885..3802150 [-], 1266333985097serine-type D-Ala-D-Ala carboxypeptidase  SPOR
2Metme_34403802197..3803240 [-], 1044333985098cation diffusion facilitator family transporter 
3Metme_34413803482..3805086 [-], 1605333985099Ser/Thr phosphatase 
4Metme_34423805083..3808628 [-], 3546333985100type VI secretion protein IcmF  TssM
5Metme_34433808637..3810025 [-], 1389333985101DotU family type IV/VI secretion system protein  TssL
6Metme_34443810031..3811371 [-], 1341333985102type VI secretion protein  TssK
7Metme_34453811407..3812900 [-], 1494333985103FHA domain-containing protein  Fha
8Metme_34463812936..3815212 [-], 2277333985104peptidase C14 caspase catalytic subunit p20 
9Metme_34473815288..3816091 [-], 804333985105hypothetical protein 
10Metme_34483816088..3816561 [-], 474333985106type VI secretion lipoprotein  TssJ
11Metme_34493816804..3818528 [+], 1725333985107serine/threonine protein kinase 
12Metme_34503818623..3819873 [+], 1251333985108outer membrane autotransporter barrel domain-containing protein 
13Metme_34513819930..3820763 [-], 834333985109nucleic acid binding protein 
 
flank Genes in the 5-kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any. In the 'Note' column,if available, '(e)' denotes effector while '(i)' for immunity protein

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Proteins        Genes

V. Investigation of the genomic context of the T6SS gene cluster.
1. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the mobile genetic elements database, ACLAME.
 






2. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the virulence factor database, VFDB.
 






3. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against against the antibiotic resistance database, ARDB.
 






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