SecReT6
I. Summary
SecReT6 ID445 insolico
StrainVibrio anguillarum 775
Repliconchromosome I [Browse all T6SS(s) in this replicon]
AccessionNC_015633
Location1525488..1552028
Comment
FunctionN/A
T6SS TypeType i; subtype i5
insolico Bioinformatics investigation has been performed on this T6SS.

II. T6SS components
ComponentTssHTssDTssLTssITssATssBTssCTssETssF
Number111111211
ComponentTssGTssJTssKTssM
Number1111
Click the above image to have a larger view
III. genome coordinates of the T6SS gene cluster
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProductNote
1VAA_030501521316..1521534 [-], 219336124000transcriptional regulator, Cro/CI family 
2VAA_030491521635..1521871 [+], 237336124001hypothetical protein 
3VAA_030481521864..1523075 [+], 1212336124002transposase 
4VAA_030471523072..1523410 [+], 339336124003hypothetical protein 
5VAA_030461523489..1523869 [+], 381336124004hypothetical protein 
6VAA_030451523934..1524215 [+], 282336124005Reverse transcriptase 
7VAA_030441524619..1524915 [-], 297336124006hypothetical protein  PAAR
8VAA_030431524925..1525491 [-], 567336124007hypothetical protein 
9VAA_030421525488..1527485 [-], 1998336124008VgrG  TssI
10VAA_030411527692..1527835 [+], 144336124009hypothetical protein 
11VAA_030401528113..1529546 [+], 1434336124010hypothetical protein  TssA
12VAA_030391529573..1530103 [+], 531336124011hypothetical protein  TssD
13VAA_030381530173..1530682 [+], 510336124012hypothetical protein  TssB
14VAA_030371530682..1532163 [+], 1482336124013hypothetical protein  TssC
15VAA_030361532210..1533565 [+], 1356336124014hypothetical protein  TssC
16VAA_030351533562..1533978 [+], 417336124015hypothetical protein  TssE
17VAA_030341533971..1534567 [+], 597336124016hypothetical protein  TssF
18VAA_030321535732..1536715 [+], 984336124017hypothetical protein  TssG
19VAA_030311536724..1539330 [+], 2607336124018ClpV protein  TssH
20VAA_030301539473..1540627 [+], 1155336124019hypothetical protein 
21VAA_030291540637..1542832 [+], 2196336124020hypothetical protein 
22VAA_030281542829..1543962 [+], 1134336124021hypothetical protein 
23VAA_030271543965..1544660 [+], 696336124022hypothetical protein 
24VAA_030261544670..1545641 [+], 972336124023hypothetical protein  Fha
25VAA_030251545641..1546108 [+], 468336124024hypothetical protein  TssJ
26VAA_030241546108..1547424 [+], 1317336124025hypothetical protein  TssK
27VAA_030231547432..1548574 [+], 1143336124026hypothetical protein  TssL
28VAA_030221548576..1552028 [+], 3453336124027hypothetical protein  TssM
29VAA_030211552031..1552669 [+], 639336124028hypothetical protein 
30VAA_030201552685..1554574 [+], 1890336124029hypothetical protein 
31VAA_030191555037..1555264 [+], 228336124030transposase 
32VAA_030181555261..1556133 [+], 873336124031transposase 
33VAA_030171556456..1556932 [+], 477336124032hypothetical protein 
 
flank Genes in the 5-kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any. In the 'Note' column,if available, '(e)' denotes effector while '(i)' for immunity protein

Download FASTA format files
Proteins        Genes

V. Investigation of the genomic context of the T6SS gene cluster.
1. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the mobile genetic elements database, ACLAME.
 






2. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the virulence factor database, VFDB.
 






3. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against against the antibiotic resistance database, ARDB.
 






N/A
N/A
N/A