SecReT6
I. Summary
SecReT6 ID446 insolico
StrainVibrio anguillarum 775
Repliconchromosome II [Browse all T6SS(s) in this replicon]
AccessionNC_015637
Location611059..633666
Comment
FunctionN/A
T6SS TypeType i; subtype i1
insolico Bioinformatics investigation has been performed on this T6SS.

II. T6SS components
ComponentTssHTssDTssLTssITssATssBTssCTssETssF
Number101121111
ComponentTssGTssJTssKTssM
Number0111
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III. genome coordinates of the T6SS gene cluster
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProductNote
1VAA_02828606143..607840 [-], 1698336125961hypothetical protein 
2VAA_02829608028..608201 [+], 174336125962hypothetical protein 
3VAA_02830608414..609502 [+], 1089336125963hypothetical protein 
4VAA_02832609976..610896 [-], 921336125964transposase 
5VAA_02833611059..611463 [+], 405336125965hypothetical protein  TssB
6VAA_02834611510..612988 [+], 1479336125966hypothetical protein  TssC
7VAA_02835612991..613428 [+], 438336125967hypothetical protein  TssE
8VAA_02837613435..615204 [+], 1770336125968hypothetical protein  TssF
9VAA_02839616195..617667 [+], 1473336125969hypothetical protein  Fha
10VAA_02840617670..618149 [+], 480336125970hypothetical protein  TssJ
11VAA_02841618154..619488 [+], 1335336125971hypothetical protein  TssK
12VAA_02842619488..620264 [+], 777336125972DotU  TssL
13VAA_02843620279..622906 [+], 2628336125973ClpV protein  TssH
14VAA_02844622903..624471 [+], 1569336125974transcriptional regulator  VasH
15VAA_02845624468..625127 [+], 660336125975hypothetical protein 
16VAA_02846625137..626534 [+], 1398336125976hypothetical protein  TssA
17VAA_02847626552..630097 [+], 3546336125977IcmF-like protein  TssM
18VAA_02848630155..631450 [+], 1296336125978hypothetical protein  TssA
19VAA_02849631582..633666 [+], 2085336125979VgrG protein  TssI
20VAA_02850633642..634463 [+], 822336125980hypothetical protein 
21VAA_02851634460..636601 [+], 2142336125981VgrG 
22VAA_02853637360..638103 [+], 744336125982hypothetical protein 
23VAA_02854638180..638575 [+], 396336125983hypothetical protein 
 
flank Genes in the 5-kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any. In the 'Note' column,if available, '(e)' denotes effector while '(i)' for immunity protein

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Proteins        Genes

V. Investigation of the genomic context of the T6SS gene cluster.
1. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the mobile genetic elements database, ACLAME.
 






2. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the virulence factor database, VFDB.
 






3. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against against the antibiotic resistance database, ARDB.
 







Homology Effector list
VCA0020 , VCA0018, VCA0017, VCA0017, VC1416, VC1418

Effector identified
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProduct  Homolog
1VAA_002992841667..2844927 [-], 3261336125207hypothetical protein VCA0020
2VAA_002972845811..2847907 [-], 2097336125209VgrG protein VCA0018
3VAA_002962848047..2848565 [-], 519336125210Hemolysin co-regulated protein VCA0017
4VAA_01943471428..471946 [-], 519336125843hemolysin co-regulated protein VCA0017
5VAA_02849631582..633666 [+], 2085336125979VgrG protein VC1416
6VAA_01024887464..889374 [+], 1911336126181mono- and diacylglycerol lipase VC1418

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Proteins        Genes

Homology Immunity protein list
VCA0021, VC1419

Immunity protein identified
#Locus tag(Gene)Coordinates [+/-], size (bp)Protein GIProduct  Homolog
1VAA_003002840938..2841666 [-], 729336125206hypothetical protein VCA0021
2VAA_01026890093..890827 [+], 735336126183hypothetical protein VC1419

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Proteins        Genes
N/A