SecReT6
I. Summary
SecReT6 ID447 insolico
StrainEnterobacter aerogenes KCTC 2190
Repliconchromosome [Browse all T6SS(s) in this replicon]
AccessionNC_015663
Location4139426..4167973
Comment
FunctionN/A
T6SS TypeType i; subtype i3
insolico Bioinformatics investigation has been performed on this T6SS.

II. T6SS components
ComponentTssHTssDTssLTssITssATssBTssCTssETssF
Number111111111
ComponentTssGTssJTssKTssM
Number1111
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III. genome coordinates of the T6SS gene cluster
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProductNote
1EAE_192854135467..4135838 [-], 372336250333hypothetical protein 
2EAE_192904135858..4136238 [-], 381336250334hypothetical protein 
3EAE_192954136245..4136643 [-], 399336250335hypothetical protein 
4EAE_193004136736..4137083 [-], 348336250336hypothetical protein 
5EAE_193054137189..4137578 [-], 390336250337hypothetical protein 
6EAE_193104137619..4138005 [-], 387336250338hypothetical protein 
7EAE_193154138074..4138451 [-], 378336250339hypothetical protein 
8EAE_193204138494..4138826 [-], 333336250340hypothetical protein 
9EAE_193254139042..4139371 [-], 330336250341hypothetical protein 
10EAE_193304139426..4141822 [-], 2397336250342hypothetical protein  TssI
11EAE_193354141861..4142235 [-], 375336250343hypothetical protein 
12EAE_193404142232..4142621 [-], 390336250344hypothetical protein 
13EAE_193454142700..4144124 [-], 1425336250345hypothetical protein 
14EAE_193504144149..4146761 [-], 2613336250346protein clpV1  TssH
15EAE_193554146811..4147854 [-], 1044336250347type VI secretion system protein ImpH  TssG
16EAE_193604147851..4149722 [-], 1872336250348type VI secretion system protein ImpG  TssF
17EAE_193654149725..4150288 [-], 564336250349type VI secretion system protein ImpF  TssE
18EAE_193704150285..4151079 [-], 795336250350type VI secretion system protein ImpE  TagJ
19EAE_193754151089..4152072 [-], 984336250351hypothetical protein 
20EAE_193804152094..4152888 [-], 795336250352hypothetical protein 
21EAE_193854152888..4154615 [-], 1728336250353FHA domain-containing protein  Fha
22EAE_193904154735..4155157 [-], 423336250354hypothetical protein 
23EAE_193954155531..4156520 [-], 990336250355membrane protein 
24EAE_194004156585..4157067 [-], 483336250356type VI secretion system secreted protein Hcp  TssD
25EAE_194054157392..4158891 [-], 1500336250357type VI secretion system protein ImpC  TssC
26EAE_194104158895..4159419 [-], 525336250358type VI secretion system protein ImpB  TssB
27EAE_194154159495..4160505 [-], 1011336250359type VI secretion system protein ImpA  TssA
28EAE_194204160517..4161224 [-], 708336250360type VI secretion system protein ImpM 
29EAE_194254161241..4164852 [-], 3612336250361type VI secretion system protein ImpL  TssM
30EAE_194304164855..4166084 [-], 1230336250362hypothetical protein  TssL
31EAE_194354166099..4167442 [-], 1344336250363type VI secretion system protein ImpJ  TssK
32EAE_194404167467..4167973 [-], 507336250364hypothetical protein  TssJ
33EAE_194454167998..4168492 [-], 495336250365hypothetical protein 
34EAE_194504169139..4169453 [-], 315336250366hypothetical protein 
35EAE_194554169695..4171017 [+], 1323336250367hypothetical protein 
36EAE_194604171091..4172068 [-], 9783362503682-nitropropane dioxygenase 
 
flank Genes in the 5-kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any. In the 'Note' column,if available, '(e)' denotes effector while '(i)' for immunity protein

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Proteins        Genes

V. Investigation of the genomic context of the T6SS gene cluster.
1. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the mobile genetic elements database, ACLAME.
 






2. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the virulence factor database, VFDB.
 






3. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against against the antibiotic resistance database, ARDB.
 







Homology Effector list
SMA3455 , SMA2263

Effector identified
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProduct  Homolog
1EAE_03230674938..675420 [-], 483336247150protein hcp1 SMA3455
2EAE_194004156585..4157067 [-], 483336250356type VI secretion system secreted protein Hcp SMA2263

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Proteins        Genes
N/A
N/A