SecReT6
I. Summary
SecReT6 ID449 insolico
StrainEnterobacter aerogenes KCTC 2190
Repliconchromosome [Browse all T6SS(s) in this replicon]
AccessionNC_015663
Location4680737..4709994
Comment
FunctionN/A
insolico Bioinformatics investigation has been performed on this T6SS.

II. T6SS components
ComponentTssHTssDTssLTssITssATssBTssCTssETssF
Number001200001
ComponentTssGTssJTssKTssM
Number1111
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III. genome coordinates of the T6SS gene cluster
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProductNote
1EAE_218804679046..4679174 [-], 129336250846hypothetical protein 
2EAE_218854679171..4680724 [-], 1554336250847hypothetical protein 
3EAE_218904680737..4682953 [-], 2217336250848hypothetical protein  TssI
4EAE_218954683608..4684027 [+], 420336250849DNA polymerase V subunit UmuD 
5EAE_21900 (umuC)4684030..4685295 [+], 1266336250850DNA polymerase V subunit UmuC 
6EAE_219054685390..4685929 [-], 540336250851type VI secretion system protein VasD  TssJ
7EAE_219104685907..4686992 [-], 1086336250852hypothetical protein  TssG
8EAE_219154686956..4688716 [-], 1761336250853type VI secretion protein  TssF
9EAE_219204688789..4692172 [-], 3384336250854hypothetical protein  TssM
10EAE_219354694685..4695257 [-], 573336250855hypothetical protein 
11EAE_219404695459..4697129 [-], 1671336250856hypothetical protein 
12EAE_219454697102..4697671 [-], 570336250857hypothetical protein 
13EAE_219504697888..4699921 [-], 2034336250858hypothetical protein 
14EAE_219554699894..4700463 [-], 570336250859hypothetical protein 
15EAE_219604700666..4700917 [-], 252336250860hypothetical protein 
16EAE_219654700890..4701459 [-], 570336250861hypothetical protein 
17EAE_219704701516..4702274 [-], 759336250862hypothetical protein 
18EAE_219754702277..4703323 [-], 1047336250863hypothetical protein 
19EAE_219804703434..4703691 [-], 258336250864PAAR repeat-containing protein  PAAR
20EAE_219854703731..4706109 [-], 2379336250865Rhs element Vgr protein  TssI
21EAE_219904706310..4707992 [-], 1683336250866OmpA/MotB domain-containing protein  TagL
22EAE_219954707989..4708654 [-], 666336250867hypothetical protein  TssL
23EAE_220004708651..4709994 [-], 1344336250868hypothetical protein  TssK
24EAE_220054710010..4710288 [-], 279336250869hypothetical protein 
25EAE_220104710767..4711762 [-], 996336250870hypothetical protein 
26EAE_220154711771..4712727 [-], 957336250871protein YadT 
27EAE_220204712743..4713420 [-], 678336250872hypothetical protein 
28EAE_220254713723..4714409 [+], 687336250873Pseudouridine synthase 
 
flank Genes in the 5-kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any. In the 'Note' column,if available, '(e)' denotes effector while '(i)' for immunity protein

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Proteins        Genes

V. Investigation of the genomic context of the T6SS gene cluster.
1. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the mobile genetic elements database, ACLAME.
 






2. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the virulence factor database, VFDB.
 






3. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against against the antibiotic resistance database, ARDB.
 






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