SecReT6
I. Summary
SecReT6 ID450 insolico
StrainMyxococcus fulvus HW-1
Repliconchromosome [Browse all T6SS(s) in this replicon]
AccessionNC_015711
Location7852915..7902412
Comment
FunctionN/A
T6SS TypeType i; subtype i1
insolico Bioinformatics investigation has been performed on this T6SS.

II. T6SS components
ComponentTssHTssDTssLTssITssATssBTssCTssETssF
Number511111111
ComponentTssGTssJTssKTssM
Number1111
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III. genome coordinates of the T6SS gene cluster
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProductNote
1LILAB_319507852339..7852824 [+], 486338536015hypothetical protein 
2LILAB_319557852915..7854711 [-], 1797338536016OmpA domain-containing protein  TagL
3LILAB_319607854974..7857238 [+], 2265338536017Rhs element Vgr family protein  TssI
4LILAB_319657857418..7858002 [+], 585338536018hypothetical protein  TssJ
5LILAB_319707857999..7859366 [+], 1368338536019hypothetical protein  TssK
6LILAB_319757859382..7860098 [+], 717338536020hypothetical protein  TssL
7LILAB_319807860098..7863790 [+], 3693338536021hypothetical protein  TssM
8LILAB_319857863798..7864724 [+], 927338536022hypothetical protein 
9LILAB_319907864817..7866715 [+], 1899338536023hypothetical protein  TssA
10LILAB_319957866798..7867292 [+], 495338536024hypothetical protein  TssB
11LILAB_320007867318..7868802 [+], 1485338536025hypothetical protein  TssC
12LILAB_320057868922..7869413 [+], 492338536026hypothetical protein  TssD
13LILAB_320107869496..7869891 [+], 396338536027hypothetical protein  TssE
14LILAB_320157869928..7871679 [+], 1752338536028hypothetical protein  TssF
15LILAB_320207871715..7872686 [+], 972338536029hypothetical protein  TssG
16LILAB_320257872808..7875384 [+], 2577338536030ATP-dependent chaperone protein ClpB  TssH
17LILAB_320307875393..7876427 [+], 1035338536031putative lipoprotein 
18LILAB_320357876578..7876943 [+], 366338536032hypothetical protein 
19LILAB_320407877007..7877558 [+], 552338536033hypothetical protein 
20LILAB_320457877581..7878918 [-], 1338338536034glucosyl hydrolase family protein 
21LILAB_320507879041..7880108 [-], 1068338536035sulfate ABC transporter ATP-binding protein 
22LILAB_320557880105..7880962 [-], 858338536036sulfate ABC transporter permease CysW 
23LILAB_320607880959..7881777 [-], 819338536037sulfate ABC transporter permease CysT 
24LILAB_320657881814..7882824 [-], 1011338536038sulfate ABC transporter periplasmic sulfate-binding protein 
25LILAB_320707883152..7885746 [+], 2595338536039hypothetical protein 
26LILAB_320757885878..7889249 [+], 3372338536040ClpB family protein  TssH
27LILAB_320807889254..7892667 [+], 3414338536041ClpA/B family protein  TssH
28LILAB_320857892669..7894963 [+], 2295338536042ClpA/B family protein  TssH
29LILAB_320907895018..7895599 [-], 582338536043superoxide dismutase, Fe 
30LILAB_320957895633..7896100 [-], 468338536044flavin reductase domain-containing protein 
31LILAB_321007896298..7898559 [-], 2262338536045isoquinoline 1-oxidoreductase subunit beta 
32LILAB_321057898570..7899055 [-], 486338536046isoquinoline 1-oxidoreductase subunit alpha 
33LILAB_321107899028..7899660 [-], 633338536047putative lipoprotein 
34LILAB_321157899758..7902412 [-], 2655338536048ATP-dependent Clp protease, ATP-binding subunit ClpC  TssH
35LILAB_321207902602..7903036 [+], 435338536049hypothetical protein 
36LILAB_321257903110..7903688 [+], 579338536050hypothetical protein 
37LILAB_321307903925..7905334 [+], 1410338536051EmrB/QacA family drug resistance transporter 
38LILAB_321357905360..7906832 [-], 1473338536052endoglucanase 
 
flank Genes in the 5-kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any. In the 'Note' column,if available, '(e)' denotes effector while '(i)' for immunity protein

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Proteins        Genes

V. Investigation of the genomic context of the T6SS gene cluster.
1. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the mobile genetic elements database, ACLAME.
 






2. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the virulence factor database, VFDB.
 






3. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against against the antibiotic resistance database, ARDB.
 







Homology Effector list
MXAN_4809

Effector identified
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProduct  Homolog
1LILAB_320057868922..7869413 [+], 492338536026hypothetical protein MXAN_4809

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Proteins        Genes
N/A
N/A