SecReT6
I. Summary
SecReT6 ID453 insolico
StrainPseudomonas stutzeri ATCC 17588 = LMG 11199
Repliconchromosome [Browse all T6SS(s) in this replicon]
AccessionNC_015740
Location4402199..4416601
Comment
FunctionN/A
T6SS TypeType i; subtype i1
insolico Bioinformatics investigation has been performed on this T6SS.

II. T6SS components
ComponentTssHTssDTssLTssITssATssBTssCTssETssF
Number100111111
ComponentTssGTssJTssKTssM
Number1000
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III. genome coordinates of the T6SS gene cluster
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProductNote
1PSTAB_40734397856..4398551 [+], 696339496150amino acid ABC transporter permease 
2PSTAB_40744398548..4399237 [+], 690339496151amino acid ABC transporter permease 
3PSTAB_40754399338..4400240 [+], 903339496152aldose 1-epimerase family protein 
4PSTAB_40764400619..4402181 [+], 1563339496153ImpA domain-containing protein  TssA
5PSTAB_40774402199..4402705 [+], 507339496154hypothetical protein  TssB
6PSTAB_40784402732..4404210 [+], 1479339496155hypothetical protein  TssC
7PSTAB_40794404215..4404622 [+], 408339496156GPW/gp25 family protein  TssE
8PSTAB_40804404636..4406567 [+], 1932339496157Rhs element Vgr protein  PAAR
9PSTAB_40814406564..4407199 [+], 636339496158hypothetical protein 
10PSTAB_40824407186..4407548 [+], 363339496159hypothetical protein 
11PSTAB_40834407604..4409394 [+], 1791339496160hypothetical protein  TssF
12PSTAB_40844409561..4410364 [+], 804339496161hypothetical protein  TssG
13PSTAB_40854410376..4412967 [+], 2592339496162ATPase  TssH
14PSTAB_40864412978..4414486 [+], 1509339496163Fis family transcriptional regulator  Sfa2
15PSTAB_40874414502..4416601 [+], 2100339496164Rhs element Vgr protein  TssI
16PSTAB_40884416574..4417428 [+], 855339496165hypothetical protein 
17PSTAB_40894417434..4418681 [+], 1248339496166hypothetical protein 
18PSTAB_40904419178..4419384 [+], 207339496167hypothetical protein 
19PSTAB_40914419465..4420412 [+], 948339496168malonate utilization transcriptional regulator 
 
flank Genes in the 5-kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any. In the 'Note' column,if available, '(e)' denotes effector while '(i)' for immunity protein

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Proteins        Genes

V. Investigation of the genomic context of the T6SS gene cluster.
1. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the mobile genetic elements database, ACLAME.
 






2. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the virulence factor database, VFDB.
 






3. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against against the antibiotic resistance database, ARDB.
 






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