SecReT6
I. Summary
SecReT6 ID454 insolico
StrainSalmonella bongori NCTC 12419
Repliconchromosome [Browse all T6SS(s) in this replicon]
AccessionNC_015761
Location1350271..1368872
Comment
FunctionN/A
T6SS TypeType i; subtype i4a
insolico Bioinformatics investigation has been performed on this T6SS.

II. T6SS components
ComponentTssHTssDTssLTssITssATssBTssCTssETssF
Number111111111
ComponentTssGTssJTssKTssM
Number1011
Click the above image to have a larger view
III. genome coordinates of the T6SS gene cluster
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProductNote
1SBG_12291345830..1346879 [-], 1050339999216zinc-type alcohol dehydrogenase protein 
2SBG_12301347967..1348926 [-], 960339999217pathogenicity island protein 
3SBG_12311349099..1349827 [-], 729339999218transcriptional regulator 
4SBG_12321349885..1350274 [-], 390339999219hypothetical protein 
5SBG_12331350271..1351197 [-], 927339999220type VI secretion protein ImpA  TssA
6SBG_12341351208..1354747 [-], 3540339999221type VI secretion protein IcmF  TssM
7SBG_12351354744..1355490 [-], 747339999222type VI secretion protein DotU  TssL
8SBG_12361355480..1356811 [-], 1332339999223type VI secretion protein  TssK
9SBG_12371356813..1357283 [-], 471339999224hypothetical protein 
10SBG_12381357614..1358165 [+], 552339999225hypothetical protein  TssB
11SBG_12391358186..1359667 [+], 1482339999226type VI secretion protein VipB  TssC
12SBG_12401359686..1360162 [+], 477339999227type VI secretion effector protein Hcp  TssD
13SBG_12411360175..1360552 [+], 378339999228type VI secretion protein gp25  TssE
14SBG_12421360571..1362292 [+], 1722339999229type VI secretion protein VasA  TssF
15SBG_12431362346..1363194 [+], 849339999230type VI secretion protein SciN  TssG
16SBG_12441363185..1365698 [+], 2514339999231type VI secretion protein ClpV  TssH
17SBG_12451365722..1366738 [+], 1017339999232hypothetical protein 
18SBG_12461366908..1368872 [+], 1965339999233type VI secretion protein VgrG  TssI
19SBG_12471368872..1369393 [+], 522339999234hypothetical protein 
20SBG_1248 (ydhE)1369794..1371167 [-], 1374339999235integral membrane protein 
21SBG_1249 (ribE)1371384..1372025 [+], 642339999236riboflavin synthase alpha chain 
22SBG_1250 (cfa)1372069..1373217 [-], 1149339999237cyclopropane-fatty-acyl-phospholipid synthase 
 
flank Genes in the 5-kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any. In the 'Note' column,if available, '(e)' denotes effector while '(i)' for immunity protein

Download FASTA format files
Proteins        Genes

V. Investigation of the genomic context of the T6SS gene cluster.
1. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the mobile genetic elements database, ACLAME.
 






2. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the virulence factor database, VFDB.
 






3. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against against the antibiotic resistance database, ARDB.
 







Homology Effector list
Hcp

Effector identified
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProduct  Homolog
1SBG_12401359686..1360162 [+], 477339999227type VI secretion effector protein Hcp Hcp

Download FASTA format files
Proteins        Genes
N/A
N/A