SecReT6
I. Summary
SecReT6 ID457 insolico
StrainEnterobacter asburiae LF7a
Repliconchromosome [Browse all T6SS(s) in this replicon]
AccessionNC_015968
Location2064431..2094293
Comment
FunctionN/A
T6SS TypeType i; subtype i2
insolico Bioinformatics investigation has been performed on this T6SS.

II. T6SS components
ComponentTssHTssDTssLTssITssATssBTssCTssETssF
Number111121111
ComponentTssGTssJTssKTssM
Number1111
Click the above image to have a larger view
III. genome coordinates of the T6SS gene cluster
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProductNote
1Entas_19152059952..2060575 [-], 624345299081glutathione S-transferase 
2Entas_19162060712..2061890 [-], 1179345299082major facilitator superfamily protein 
3Entas_19172061939..2063066 [-], 1128345299083hypothetical protein 
4Entas_19182063180..2064064 [+], 885345299084LysR family transcriptional regulator 
5Entas_19192064431..2064928 [+], 498345299085type VI secretion protein  TssB
6Entas_19202064968..2066509 [+], 1542345299086EvpB family type VI secretion protein  TssC
7Entas_19212066527..2067867 [+], 1341345299087type VI secretion protein  TssK
8Entas_19222067864..2068553 [+], 690345299088DotU family type IV/VI secretion system protein  TssL
9Entas_19232068550..2070256 [+], 1707345299089OmpA/MotB domain-containing protein  TagL
10Entas_19242070261..2070752 [+], 492345299090Hcp1 family type VI secretion system effector  TssD
11Entas_19252070926..2073580 [+], 2655345299091type VI secretion ATPase, ClpV1 family  TssH
12Entas_19262073577..2075955 [+], 2379345299092Rhs element Vgr protein  TssI
13Entas_19272075956..2076741 [+], 786345299093hypothetical protein 
14Entas_19282076799..2077329 [+], 531345299094hypothetical protein 
15Entas_19292077317..2077466 [+], 150345299095hypothetical protein 
16Entas_19302077563..2078096 [+], 534345299096hypothetical protein 
17Entas_19312078084..2078188 [+], 105345299097hypothetical protein 
18Entas_19332078850..2078999 [+], 150345299098hypothetical protein 
19Entas_19342079096..2079626 [+], 531345299099hypothetical protein 
20Entas_19352079614..2082061 [+], 2448345299100hypothetical protein 
21Entas_19362082080..2082337 [+], 258345299101PAAR repeat-containing protein  PAAR
22Entas_19372082415..2083473 [+], 1059345299102hypothetical protein 
23Entas_19382083457..2086894 [+], 3438345299103ImcF domain-containing protein  TssM
24Entas_19392086894..2088495 [+], 1602345299104type VI secretion-associated protein  TssA
25Entas_19402088539..2090293 [+], 1755345299105type VI secretion protein  TssF
26Entas_19412090257..2091342 [+], 1086345299106type VI secretion protein  TssG
27Entas_19422091320..2091865 [+], 546345299107type VI secretion lipoprotein  TssJ
28Entas_19432091865..2092320 [+], 456345299108type VI secretion system lysozyme-like protein  TssE
29Entas_19442092335..2092805 [+], 471345299109hypothetical protein 
30Entas_19452092908..2094293 [+], 1386345299110ImpA domain-containing protein  TssA
31Entas_19462094398..2095165 [-], 768345299111ABC transporter-like protein 
32Entas_19472095166..2096122 [-], 957345299112ABC transporter 
33Entas_19482096119..2097117 [-], 999345299113ABC transporter 
34Entas_19492097114..2098016 [-], 903345299114ABC transporter periplasmic protein 
 
flank Genes in the 5-kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any. In the 'Note' column,if available, '(e)' denotes effector while '(i)' for immunity protein

Download FASTA format files
Proteins        Genes

V. Investigation of the genomic context of the T6SS gene cluster.
1. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the mobile genetic elements database, ACLAME.
 






2. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the virulence factor database, VFDB.
 






3. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against against the antibiotic resistance database, ARDB.
 







Homology Effector list
EC042_4529 , EC042_4529

Effector identified
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProduct  Homolog
1Entas_19242070261..2070752 [+], 492345299090Hcp1 family type VI secretion system effector EC042_4529
2Entas_20632231243..2231725 [-], 483345299225Hcp1 family type VI secretion system effector EC042_4529

Download FASTA format files
Proteins        Genes
N/A
N/A