SecReT6
I. Summary
SecReT6 ID458 insolico
StrainEnterobacter asburiae LF7a
Repliconchromosome [Browse all T6SS(s) in this replicon]
AccessionNC_015968
Location4125324..4154884
Comment
FunctionN/A
T6SS TypeType i; subtype i1
insolico Bioinformatics investigation has been performed on this T6SS.

II. T6SS components
ComponentTssHTssDTssLTssITssATssBTssCTssETssF
Number111121111
ComponentTssGTssJTssKTssM
Number1111
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III. genome coordinates of the T6SS gene cluster
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProductNote
1Entas_38354120550..4122052 [-], 1503345300972NusA antitermination factor 
2Entas_38364122081..4122533 [-], 453345300973ribosome maturation factor rimP 
3Entas_38374123161..4124507 [+], 1347345300974argininosuccinate synthase 
4Entas_38384124745..4125080 [-], 336345300975preprotein translocase subunit SecG 
5Entas_38394125324..4125842 [-], 519345300976Hcp1 family type VI secretion system effector  TssD
6Entas_38404126134..4127057 [-], 924345300977hypothetical protein 
7Entas_38414127104..4128174 [-], 1071345300978hypothetical protein 
8Entas_38424128240..4129310 [-], 1071345300979hypothetical protein 
9Entas_38434129313..4131721 [-], 2409345300980hypothetical protein 
10Entas_38444131733..4132011 [-], 279345300981PaaR repeat-containing protein  PAAR
11Entas_38454132022..4134079 [-], 2058345300982ImpA family type VI secretion-associated protein  TssI
12Entas_38464134084..4134485 [-], 402345300983Chaperone lipoprotein, PulS/OutS 
13Entas_38474134482..4135876 [-], 1395345300984ImpA domain-containing protein  TssA
14Entas_38484135929..4139588 [-], 3660345300985type VI secretion protein IcmF  TssM
15Entas_38494139595..4140995 [-], 1401345300986type VI secretion-associated protein  TssA
16Entas_38504141012..4143126 [-], 2115345300987sigma 54 interacting domain-containing protein 
17Entas_38514143126..4145720 [-], 2595345300988type VI secretion ATPase, ClpV1 family  TssH
18Entas_38524145763..4146551 [-], 789345300989DotU family type IV/VI secretion system protein  TssL
19Entas_38534146558..4147898 [-], 1341345300990type VI secretion protein  TssK
20Entas_38544147898..4148416 [-], 519345300991type VI secretion lipoprotein  TssJ
21Entas_38554148413..4149669 [-], 1257345300992FHA domain-containing protein  Fha
22Entas_38564149675..4150631 [-], 957345300993type VI secretion protein  TssG
23Entas_38574150631..4152409 [-], 1779345300994type VI secretion protein  TssF
24Entas_38584152425..4152853 [-], 429345300995type VI secretion system lysozyme-like protein  TssE
25Entas_38594152858..4154336 [-], 1479345300996EvpB family type VI secretion protein  TssC
26Entas_38604154366..4154884 [-], 519345300997type VI secretion protein  TssB
27Entas_38614155189..4156526 [-], 1338345300998phosphoglucosamine mutase 
28Entas_38624156519..4157367 [-], 849345300999dihydropteroate synthase 
29Entas_38634157465..4159408 [-], 1944345301000ATP-dependent metalloprotease FtsH 
 
flank Genes in the 5-kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any. In the 'Note' column,if available, '(e)' denotes effector while '(i)' for immunity protein

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Proteins        Genes

V. Investigation of the genomic context of the T6SS gene cluster.
1. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the mobile genetic elements database, ACLAME.
 






2. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the virulence factor database, VFDB.
 






3. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against against the antibiotic resistance database, ARDB.
 







Homology Effector list
ECA2866

Effector identified
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProduct  Homolog
1Entas_38394125324..4125842 [-], 519345300976Hcp1 family type VI secretion system effector ECA2866

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Proteins        Genes
N/A
N/A