SecReT6
I. Summary
SecReT6 ID459 insolico
StrainPseudogulbenkiania sp. NH8B
Repliconchromosome [Browse all T6SS(s) in this replicon]
AccessionNC_016002
Location1131051..1162754
Comment
FunctionN/A
T6SS TypeType i; subtype i4b
insolico Bioinformatics investigation has been performed on this T6SS.

II. T6SS components
ComponentTssHTssDTssLTssITssATssBTssCTssETssF
Number111211111
ComponentTssGTssJTssKTssM
Number1111
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III. genome coordinates of the T6SS gene cluster
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProductNote
1NH8B_11071127433..1128200 [-], 768347538927family 3 extracellular solute-binding protein 
2NH8B_11081128595..1129416 [-], 822347538928hypothetical protein 
3NH8B_11091129567..1131054 [-], 1488347538929hypothetical protein 
4NH8B_1110 (vgrG)1131051..1134176 [-], 3126347538930ImpA family type VI secretion-associated protein  TssI
5NH8B_11111134183..1134671 [-], 489347538931hypothetical protein  TagL
6NH8B_1112 (hcp)1134739..1135236 [-], 498347538932type VI secretion system effector  TssD
7NH8B_1113 (impC)1135340..1136824 [-], 1485347538933type VI secretion protein EvpB/ImpC  TssC
8NH8B_1114 (impB)1136828..1137340 [-], 513347538934type VI secretion protein ImpB  TssB
9NH8B_11151137382..1138401 [-], 1020347538935type VI secretion-associated protein 
10NH8B_1116 (icmF)1138416..1142375 [-], 3960347538936type VI secretion protein IcmF  TssM
11NH8B_11171142396..1142941 [-], 546347538937peptidase M15B and M15C DD-carboxypeptidase VanY/endolysin 
12NH8B_1118 (lip)1143417..1143953 [+], 537347538938type VI secretion lipoprotein, Lip family  TssJ
13NH8B_1119 (impJ)1144031..1145377 [+], 1347347538939type VI secretion protein ImpJ  TssK
14NH8B_1120 (dotU)1145385..1146089 [+], 705347538940type IV/VI secretion system protein, DotU family  TssL
15NH8B_1121 (impF)1146093..1146578 [+], 486347538941type VI secretion system lysozyme-like protein  TssE
16NH8B_1122 (vgrG)1146596..1149298 [+], 2703347538942type VI secretion system, Vgr family protein  TssI
17NH8B_11231149295..1150056 [+], 76234753894350S ribosomal protein L5 
18NH8B_11241150077..1150520 [+], 444347538944hypothetical protein 
19NH8B_11251150517..1151074 [+], 558347538945hypothetical protein 
20NH8B_11261151153..1151560 [+], 408347538946hypothetical protein 
21NH8B_11271151611..1152384 [+], 774347538947hypothetical protein 
22NH8B_11281152609..1154372 [+], 1764347538948hypothetical protein 
23NH8B_1129 (impG)1154392..1156248 [+], 1857347538949type VI secretion protein ImpG  TssF
24NH8B_1130 (impH)1156212..1157228 [+], 1017347538950type VI secretion protein ImpH  TssG
25NH8B_1131 (clpV)1157291..1159918 [+], 2628347538951type VI secretion ATPase, ClpV1 family  TssH
26NH8B_11321159929..1161353 [+], 1425347538952hypothetical protein 
27NH8B_11331161350..1161613 [+], 264347538953PAAR motif-containing protein  PAAR
28NH8B_1134 (impA)1161657..1162754 [+], 1098347538954ImpA-like N-terminal family protein  TssA
29NH8B_11351162856..1164067 [-], 1212347538955Rh family protein/ammonium transporter 
30NH8B_11361164323..1164811 [-], 489347538956AsnC family transcriptional regulator 
31NH8B_11371164949..1166253 [+], 1305347538957D-amino-acid dehydrogenase 
32NH8B_1138 (alr)1166261..1167328 [+], 1068347538958alanine racemase 
 
flank Genes in the 5-kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any. In the 'Note' column,if available, '(e)' denotes effector while '(i)' for immunity protein

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Proteins        Genes

V. Investigation of the genomic context of the T6SS gene cluster.
1. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the mobile genetic elements database, ACLAME.
 






2. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the virulence factor database, VFDB.
 






3. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against against the antibiotic resistance database, ARDB.
 






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