SecReT6
I. Summary
SecReT6 ID460 insolico
StrainXanthomonas axonopodis pv. citrumelo F1
Repliconchromosome [Browse all T6SS(s) in this replicon]
AccessionNC_016010
Location2402560..2431629
Comment
FunctionN/A
T6SS TypeType i; subtype i3
insolico Bioinformatics investigation has been performed on this T6SS.

II. T6SS components
ComponentTssHTssDTssLTssITssATssBTssCTssETssF
Number111111111
ComponentTssGTssJTssKTssM
Number1011
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III. genome coordinates of the T6SS gene cluster
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProductNote
1XACM_20942398956..2399990 [+], 1035346724995dehydrogenase 
2XACM_20952400306..2400584 [-], 279346724996hypothetical protein 
3XACM_20962400914..2401876 [-], 963346724997hypothetical protein 
4XACM_20972402003..2402419 [-], 417346724998hypothetical protein 
5XACM_20982402560..2403066 [+], 507346724999hypothetical protein  TssB
6XACM_20992403071..2404579 [+], 1509346725000hypothetical protein  TssC
7XACM_21002404679..2405182 [+], 504346725001hemolysin-coregulated protein  TssD
8XACM_21012405215..2406048 [+], 834346725002Protein of avirulence locus involved in temperature-dependent protein secretion  TagJ
9XACM_21022406036..2406539 [+], 504346725003hypothetical protein  TssE
10XACM_21032406542..2408419 [+], 1878346725004hypothetical protein  TssF
11XACM_21042408383..2409393 [+], 1011346725005hypothetical protein  TssG
12XACM_2105 (clpB1)2409426..2412164 [+], 2739346725006ATP-dependent Clp protease subunit  TssH
13XACM_21062412817..2413365 [+], 549346725007hypothetical protein 
14XACM_21072413573..2414115 [+], 543346725008hypothetical protein 
15XACM_21082414488..2414724 [+], 237346725009hypothetical protein 
16XACM_21092414751..2414924 [+], 174346725010hypothetical protein 
17XACM_21102415105..2415674 [+], 570346725011hypothetical protein 
18XACM_21112415850..2417787 [+], 1938346725012hypothetical protein  TssI
19XACM_21122417796..2418335 [+], 540346725013hypothetical protein 
20XACM_21132418332..2419717 [+], 1386346725014FHA-domain-containing protein  Fha
21XACM_21142419714..2421051 [+], 1338346725015hypothetical protein  TssK
22XACM_21152421053..2422369 [+], 1317346725016hypothetical protein  TssL
23XACM_21162422373..2425831 [+], 3459346725017hypothetical protein  TssM
24XACM_21172425828..2426490 [+], 663346725018hypothetical protein 
25XACM_21182426487..2427209 [+], 723346725019phosphoprotein phosphatase 
26XACM_21192427206..2430109 [+], 2904346725020serine/threonine kinase 
27XACM_21202430106..2430432 [+], 327346725021hypothetical protein 
28XACM_21212430601..2431629 [-], 1029346725022hypothetical protein  TssA
29XACM_21222431638..2432609 [-], 972346725023LysR family transcriptional regulator 
30XACM_2123 (virA)2432723..2435155 [-], 2433346725024two-component VirA-like sensor kinase 
31XACM_21242435179..2436171 [-], 993346725025Cytochrome c peroxidase 
 
flank Genes in the 5-kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any. In the 'Note' column,if available, '(e)' denotes effector while '(i)' for immunity protein

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Proteins        Genes

V. Investigation of the genomic context of the T6SS gene cluster.
1. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the mobile genetic elements database, ACLAME.
 






2. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the virulence factor database, VFDB.
 






3. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against against the antibiotic resistance database, ARDB.
 






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