I. Summary
SecReT6 ID461 insolico
StrainXanthomonas axonopodis pv. citrumelo F1
Repliconchromosome [Browse all T6SS(s) in this replicon]
T6SS TypeType i; subtype i3
insolico Bioinformatics investigation has been performed on this T6SS.

II. T6SS components
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III. genome coordinates of the T6SS gene cluster
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProductNote
1XACM_39844607616..4608332 [-], 717346726849phosphoprotein phosphatase 
2XACM_39854608329..4608904 [-], 576346726850hypothetical protein 
3XACM_39864608901..4612425 [-], 3525346726851hypothetical protein  TssM
4XACM_39874612428..4613684 [-], 1257346726852hypothetical protein  TssL
5XACM_39884613687..4615021 [-], 1335346726853hypothetical protein  TssK
6XACM_39894615524..4616414 [-], 891346726854oxidoreductase 
7XACM_39904616643..4617545 [+], 903346726855LysR family transcriptional regulator 
8XACM_39914617604..4618935 [-], 1332346726856FHA-domain-containing protein  Fha
9XACM_39924619255..4619401 [-], 147346726857hypothetical protein 
10XACM_39934619799..4621766 [-], 1968346726858hypothetical protein  TssI
11XACM_39944621916..4623247 [-], 1332346726859methyltransferase 
12XACM_39954623480..4623794 [-], 315346726860hypothetical protein  PAAR
13XACM_39964623838..4626339 [-], 2502346726861serine/threonine kinase 
14XACM_3997 (rpoE8)4626336..4626875 [-], 540346726862hypothetical protein 
15XACM_3998 (rpoE9)4627226..4627753 [+], 528346726863ECF subfamily RNA polymerase sigma factor 
16XACM_39994627744..4628820 [+], 1077346726864FecR family transmembrane sensor protein 
17XACM_40004629285..4632173 [+], 2889346726865TonB-dependent outer membrane receptor 
18XACM_40014632277..4633578 [+], 1302346726866hypothetical protein 
19XACM_40024633650..4634954 [+], 1305346726867hypothetical protein 
20XACM_40034635574..4636308 [-], 735346726868hypothetical protein 
21XACM_40044636369..4636989 [-], 621346726869hypothetical protein 
22XACM_40054637080..4637469 [-], 390346726870hypothetical protein 
23XACM_40064637949..4638842 [-], 894346726871hypothetical protein 
24XACM_40074639135..4639602 [-], 468346726872hypothetical protein 
25XACM_4008 (clpB)4639620..4642382 [-], 2763346726873ClpB protein  TssH
26XACM_40094642438..4643445 [-], 1008346726874hypothetical protein  TssG
27XACM_40104643442..4645325 [-], 1884346726875hypothetical protein  TssF
28XACM_40114645330..4645833 [-], 504346726876hypothetical protein  TssE
29XACM_40124645840..4646634 [-], 795346726877Protein of avirulence locus involved in temperature-dependent protein secretion  TagJ
30XACM_40134646838..4647341 [-], 504346726878hemolysin-coregulated protein  TssD
31XACM_40144647424..4648917 [-], 1494346726879hypothetical protein  TssC
32XACM_40154648922..4649431 [-], 510346726880hypothetical protein  TssB
33XACM_40164649741..4650412 [+], 672346726881AraC family transcriptional regulator 
34XACM_40174650509..4650955 [-], 447346726882Universal stress protein UspA 
35XACM_40184651206..4651787 [-], 582346726883acetyltransferase 
36XACM_40194652099..4652461 [+], 363346726884hypothetical protein 
flank Genes in the 5-kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any. In the 'Note' column,if available, '(e)' denotes effector while '(i)' for immunity protein

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Proteins        Genes

V. Investigation of the genomic context of the T6SS gene cluster.
1. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the mobile genetic elements database, ACLAME.

2. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the virulence factor database, VFDB.

3. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against against the antibiotic resistance database, ARDB.