SecReT6
SecReT6
I. Summary
SecReT6 ID468 insolico
StrainFrancisella tularensis subsp. tularensis FSC198
Repliconchromosome [Browse all T6SS(s) in this replicon]
AccessionNC_008245
Location1379766..1404881
Comment
FunctionN/A
T6SS TypeType ii (Type FPI)
insolico Bioinformatics investigation has been performed on this T6SS.

II. T6SS components
ComponentPdpAPdpBIglEVgrGIglFIglGIglHDotUIglI
Number111111111
ComponentIglJPdpCPdpEIglDIglCIglBIglAPdpD
Number11111111
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III. genome coordinates of the T6SS gene cluster
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProductNote
1FTF1344 (pdpA1)1379766..1382228 [+], 2463110670871hypothetical protein  PdpA
2FTF1345 (pdpB1)1382233..1385514 [+], 3282110670872hypothetical protein  PdpB
3FTF13461385504..1385881 [+], 378110670873hypothetical protein  IglE
4FTF13471385894..1386388 [+], 495110670874hypothetical protein  VgrG
5FTF13481386393..1388123 [+], 1731110670875hypothetical protein  IglF
6FTF13491388124..1388645 [+], 522110670876hypothetical protein  IglG
7FTF13501388658..1390088 [+], 1431110670877hypothetical protein  IglH
8FTF13511390101..1390724 [+], 624110670878hypothetical protein  DotU
9FTF13521390746..1391897 [+], 1152110670879hypothetical protein  IglI
10FTF13531391863..1392636 [+], 774110670880hypothetical protein  IglJ
11FTF1354 (pdpC1)1392676..1396662 [+], 3987110670881hypothetical protein  PdpC
12FTF13551396680..1397255 [+], 576110670882hypothetical protein  PdpE
13FTF1356c (iglD1)1397262..1398467 [-], 1206110670883intracellular growth locus, subunit D  IglD
14FTF1357c (iglC1)1398479..1399114 [-], 636110670884intracellular growth locus, subunit C  IglC
15FTF1358c (iglB1)1399125..1400669 [-], 1545110670885intracellular growth locus, subunit B  IglB
16FTF1359c (iglA1)1400659..1401249 [-], 591110670886intracellular growth locus, subunit A  IglA
17FTF1360c (pdpD1)1401294..1404881 [-], 3588110670887hypothetical protein  PdpD
18FTF1363c (isftu1)1407237..1408021 [-], 785110670888transposase 
 
flank Genes in the 5-kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any. In the 'Note' column,if available, '(e)' denotes effector while '(i)' for immunity protein

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Proteins        Genes

V. Investigation of the genomic context of the T6SS gene cluster.
1. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the mobile genetic elements database, ACLAME.
 






2. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the virulence factor database, VFDB.
 






3. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against against the antibiotic resistance database, ARDB.
 







Homology Effector list
FTT_1347 , FTL_0118

Effector identified
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProduct  Homolog
1FTF13471385894..1386388 [+], 495110670874hypothetical protein FTT_1347
2FTF13521390746..1391897 [+], 1152110670879hypothetical protein FTL_0118

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Proteins        Genes
N/A
N/A