SecReT6
I. Summary
SecReT6 ID469 insolico
StrainFrancisella tularensis subsp. tularensis FSC198
Repliconchromosome [Browse all T6SS(s) in this replicon]
AccessionNC_008245
Location1773101..1798216
Comment
FunctionN/A
T6SS TypeType ii (Type FPI)
insolico Bioinformatics investigation has been performed on this T6SS.

II. T6SS components
ComponentPdpAPdpBIglEVgrGIglFIglGIglHDotUIglI
Number111111111
ComponentIglJPdpCPdpEIglDIglCIglBIglAPdpD
Number11111111
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III. genome coordinates of the T6SS gene cluster
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProductNote
1FTF1699 (pdpA2)1773101..1775563 [+], 2463110671180hypothetical protein  PdpA
2FTF1700 (pdpB2)1775568..1778849 [+], 3282110671181hypothetical protein  PdpB
3FTF17011778839..1779216 [+], 378110671182hypothetical protein  IglE
4FTF17021779229..1779723 [+], 495110671183hypothetical protein  VgrG
5FTF17031779728..1781458 [+], 1731110671184hypothetical protein  IglF
6FTF17041781459..1781980 [+], 522110671185hypothetical protein  IglG
7FTF17051781993..1783423 [+], 1431110671186hypothetical protein  IglH
8FTF17061783436..1784059 [+], 624110671187hypothetical protein  DotU
9FTF17071784081..1785232 [+], 1152110671188hypothetical protein  IglI
10FTF17081785198..1785971 [+], 774110671189hypothetical protein  IglJ
11FTF1709 (pdpC2)1786011..1789997 [+], 3987110671190hypothetical protein  PdpC
12FTF17101790015..1790590 [+], 576110671191hypothetical protein  PdpE
13FTF1711c (iglD2)1790597..1791802 [-], 1206110671192intracellular growth locus, subunit D  IglD
14FTF1712c (iglC2)1791814..1792449 [-], 636110671193intracellular growth locus, subunit C  IglC
15FTF1713c (iglB2)1792460..1794004 [-], 1545110671194intracellular growth locus, subunit B  IglB
16FTF1714c (iglA2)1793994..1794584 [-], 591110671195intracellular growth locus, subunit A  IglA
17FTF1715c (pdpD2)1794629..1798216 [-], 3588110671196hypothetical protein  PdpD
18FTF1718c (isftu1)1800572..1801356 [-], 785110671197transposase 
 
flank Genes in the 5-kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any. In the 'Note' column,if available, '(e)' denotes effector while '(i)' for immunity protein

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Proteins        Genes

V. Investigation of the genomic context of the T6SS gene cluster.
1. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the mobile genetic elements database, ACLAME.
 






2. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the virulence factor database, VFDB.
 






3. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against against the antibiotic resistance database, ARDB.
 







Homology Effector list
FTT_1347 , FTL_0118

Effector identified
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProduct  Homolog
1FTF17021779229..1779723 [+], 495110671183hypothetical protein FTT_1347
2FTF17071784081..1785232 [+], 1152110671188hypothetical protein FTL_0118

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Proteins        Genes
N/A
N/A