SecReT6
I. Summary
SecReT6 ID483 insolico
StrainEscherichia coli O26:H11 str. 11368
Repliconchromosome [Browse all T6SS(s) in this replicon]
AccessionNC_013361
Location243837..256893
Comment
FunctionN/A
insolico Bioinformatics investigation has been performed on this T6SS.

II. T6SS components
ComponentTssHTssDTssLTssITssATssBTssCTssETssF
Number111010000
ComponentTssGTssJTssKTssM
Number0101
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III. genome coordinates of the T6SS gene cluster
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProductNote
1ECO26_0212 (yafS)238946..239668 [+], 723260853418S-adenosyl-L-methionine-dependent methyltransferase 
2ECO26_0213 (rnhA)239665..240132 [-], 468260853419ribonuclease H 
3ECO26_0214 (dnaQ)240197..240928 [+], 732260853420DNA polymerase III subunit epsilon 
4ECO26_0215 (yafT)241468..242253 [+], 786260853421aminopeptidase 
5ECO26_0216 (ykfM)242390..242869 [-], 480260853422hypothetical protein 
6ECO26_0217242879..243793 [-], 915260853423hypothetical protein 
7ECO26_0218243837..244319 [-], 483260853424hypothetical protein  TssD
8ECO26_0219244343..245695 [-], 1353260853425hypothetical protein  TssA
9ECO26_0220245706..249230 [-], 3525260853426IcmF  TssM
10ECO26_0223250666..251409 [-], 744260853427hypothetical protein 
11ECO26_0224251406..254261 [-], 2856260853428ATP-dependent Clp proteinase ATP-binding chain  TssH
12ECO26_0225254270..255031 [-], 762260853429hypothetical protein  TssL
13ECO26_0228256369..256893 [-], 525260853430lipoprotein  TssJ
14ECO26_0230257682..260303 [+], 2622260853431Rhs core protein with extension 
15ECO26_0231260287..260457 [+], 171260853432hypothetical protein 
16ECO26_0232260505..260768 [+], 264260853433hypothetical protein 
 
flank Genes in the 5-kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any. In the 'Note' column,if available, '(e)' denotes effector while '(i)' for immunity protein

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Proteins        Genes

V. Investigation of the genomic context of the T6SS gene cluster.
1. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the mobile genetic elements database, ACLAME.
 






2. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the virulence factor database, VFDB.
 






3. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against against the antibiotic resistance database, ARDB.
 






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