SecReT6
I. Summary
SecReT6 ID484 insolico
StrainMethylovorus sp. MP688
Repliconchromosome [Browse all T6SS(s) in this replicon]
AccessionNC_014733
Location1240286..1245565
Comment
FunctionN/A
insolico Bioinformatics investigation has been performed on this T6SS.

II. T6SS components
ComponentTssHTssDTssLTssITssATssBTssCTssETssF
Number001000000
ComponentTssGTssJTssKTssM
Number0111
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III. genome coordinates of the T6SS gene cluster
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProductNote
1MPQ_12271235794..1236006 [+], 213313200969hypothetical protein 
2MPQ_1228 (tag)1236194..1236766 [+], 573313200970DNA-3-methyladenine glycosylase i 
3MPQ_12291237111..1239639 [+], 2529313200971methyl-accepting chemotaxis sensory transducer 
4MPQ_12301240286..1241620 [+], 1335313200972ompa/motb domain-containing protein  TssL
5MPQ_1231 (icmF)1241633..1243747 [+], 2115313200973type VI secretion protein icmf  TssM
6MPQ_12321243879..1244184 [+], 306313200974type VI secretion system protein vasd  TssJ
7MPQ_12331244171..1245565 [+], 1395313200975type VI secretion protein  TssK
8MPQ_12341245550..1246419 [+], 870313200976paar repeat-containing protein  PAAR
9MPQ_12351246846..1247241 [-], 396313200977hypothetical protein 
10MPQ_12361247485..1247856 [+], 372313200978hypothetical protein 
11MPQ_12371248022..1248384 [-], 363313200979hypothetical protein 
 
flank Genes in the 5-kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any. In the 'Note' column,if available, '(e)' denotes effector while '(i)' for immunity protein

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Proteins        Genes

V. Investigation of the genomic context of the T6SS gene cluster.
1. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the mobile genetic elements database, ACLAME.
 






2. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the virulence factor database, VFDB.
 






3. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against against the antibiotic resistance database, ARDB.
 






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