SecReT6
I. Summary
SecReT6 ID485 insolico
StrainEscherichia coli 042
Repliconchromosome [Browse all T6SS(s) in this replicon]
AccessionNC_017626
Location243529..266516
Comment
FunctionN/A
T6SS TypeType i; subtype i1
insolico Bioinformatics investigation has been performed on this T6SS.

II. T6SS components
ComponentTssHTssDTssLTssITssATssBTssCTssETssF
Number121121111
ComponentTssGTssJTssKTssM
Number1111
Click the above image to have a larger view
III. genome coordinates of the T6SS gene cluster
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProductNote
1EC042_0205 (gloB)239097..239852 [-], 756387605682hydroxyacylglutathione hydrolase 
2EC042_0206239883..240608 [+], 726387605683hypothetical protein 
3EC042_0207 (rnhA)240605..241072 [-], 468387605684ribonuclease HI 
4EC042_0208 (dnaQ)241128..241868 [+], 741387605685DNA polymerase III subunit epsilon 
5EC042_0209242404..243189 [+], 786387605686putative lipoprotein 
6EC042_0210243529..244008 [-], 480387605687putative type VI secretion system protein  TssD
7EC042_0211244026..245384 [-], 1359387605688putative type VI secretion system protein  TssA
8EC042_0212245395..248922 [-], 3528387605689putative type VI secretion system protein  TssM
9EC042_0213248942..250384 [-], 1443387605690putative type VI secretion system protein  TssA
10EC042_0214250389..251132 [-], 744387605691putative type VI secretion system protein 
11EC042_0215251129..253861 [-], 2733387605692putative type VI secretion system protein  TssH
12EC042_0216253871..254644 [-], 774387605693putative type VI secretion system protein  TssL
13EC042_0217254649..255995 [-], 1347387605694putative type VI secretion system protein  TssK
14EC042_0218255998..256522 [-], 525387605695putative type VI secretion system protein  TssJ
15EC042_0219256519..257811 [-], 1293387605696putative type VI secretion system protein  Fha
16EC042_0220257816..258865 [-], 1050387605697putative type VI secretion system protein  TssG
17EC042_0221258829..260670 [-], 1842387605698putative type VI secretion system protein  TssF
18EC042_0222260676..261101 [-], 426387605699putative type VI secretion system protein  TssE
19EC042_0223261106..262590 [-], 1485387605700putative type VI secretion system protein  TssC
20EC042_0224262613..263116 [-], 504387605701putative type VI secretion system protein  TssB
21EC042_0225263819..264337 [+], 519387605702putative type VI secretion system protein  TssD
22EC042_0226264423..264542 [+], 120387605703hypothetical protein 
23EC042_0227264558..266516 [+], 1959387605704Type VI secretion system Rhs/Vgr-family protein  TssI
24EC042_0228266516..267355 [+], 840387605705putative type VI secretion system protein 
25EC042_0229267377..268948 [+], 1572387605706putative type VI secretion system protein 
26EC042_0230269063..270025 [+], 963387605707putative type VI secretion system protein 
27EC042_0231270335..271294 [+], 960387605708H repeat-associated protein 
 
flank Genes in the 5-kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any. In the 'Note' column,if available, '(e)' denotes effector while '(i)' for immunity protein

Download FASTA format files
Proteins        Genes

V. Investigation of the genomic context of the T6SS gene cluster.
1. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the mobile genetic elements database, ACLAME.
 






2. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the virulence factor database, VFDB.
 






3. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against against the antibiotic resistance database, ARDB.
 







Homology Effector list
ABG57132

Effector identified
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProduct  Homolog
1EC042_0225263819..264337 [+], 519387605702putative type VI secretion system protein ABG57132

Download FASTA format files
Proteins        Genes
N/A
(1) Chaudhuri RR et al. (2010). Complete genome sequence and comparative metabolic profiling of the prototypical enteroaggregative Escherichia coli strain 042. PLoS One. 5(1):e8801. [PudMed:20098708] in_silico
 
in_silico This literature contains bioinformatics investigation