SecReT6
I. Summary
SecReT6 ID492 insolico
StrainBurkholderia sp. CCGE1002
Repliconchromosome II [Browse all T6SS(s) in this replicon]
AccessionNC_014118
Location1167901..1195060
Comment
FunctionN/A
T6SS TypeType i; subtype i2
insolico Bioinformatics investigation has been performed on this T6SS.

II. T6SS components
ComponentTssHTssDTssLTssITssATssBTssCTssETssF
Number111111111
ComponentTssGTssJTssKTssM
Number1111
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III. genome coordinates of the T6SS gene cluster
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProductNote
1BC1002_42701163285..1164040 [-], 756295699877hypothetical protein 
2BC1002_42711164243..1165016 [-], 774295699878short-chain dehydrogenase/reductase SDR 
3BC1002_42731166191..1166433 [-], 243295699879hypothetical protein 
4BC1002_42741166479..1166610 [+], 132295699880hypothetical protein 
5BC1002_42761167294..1167887 [+], 594295699881ParB-like nuclease 
6BC1002_42771167901..1168422 [-], 522295699882type VI secretion lipoprotein  TssJ
7BC1002_42781168449..1169585 [-], 1137295699883type VI secretion protein  TssG
8BC1002_42791169582..1171396 [-], 1815295699884type VI secretion protein  TssF
9BC1002_42801171411..1172997 [-], 1587295699885type VI secretion-associated protein  TssA
10BC1002_42811172998..1176582 [-], 3585295699886ImcF domain-containing protein  TssM
11BC1002_42821176579..1177913 [-], 1335295699887hypothetical protein 
12BC1002_42851179632..1182163 [-], 2532295699888chitinase-like protein 
13BC1002_42861182172..1184508 [-], 2337295699889Rhs element Vgr protein  TssI
14BC1002_42871184595..1186166 [-], 1572295699890type VI secretion protein EvpB  TssC
15BC1002_42881186241..1186753 [-], 513295699891type VI secretion protein  TssB
16BC1002_42891187362..1188714 [+], 1353295699892type VI secretion protein  TssK
17BC1002_42901188714..1189445 [+], 732295699893DotU family type IV / VI secretion system protein  TssL
18BC1002_42911189513..1189746 [-], 234295699894hypothetical protein 
19BC1002_42921189956..1191188 [+], 1233295699895OmpA/MotB domain-containing protein  TagL
20BC1002_42931191291..1191776 [+], 486295699896type VI secretion system effector  TssD
21BC1002_42941191903..1194620 [+], 2718295699897type VI secretion ATPase, ClpV1 family  TssH
22BC1002_42951194635..1195060 [+], 426295699898type VI secretion system lysozyme-like protein  TssE
23BC1002_42961195403..1195729 [-], 327295699899hypothetical protein 
24BC1002_42971196394..1197686 [+], 1293295699900sodium/hydrogen exchanger 
25BC1002_42981198102..1198380 [+], 279295699901hypothetical protein 
26BC1002_42991198400..1199191 [+], 792295699902phosphate ABC transporter substrate-binding protein 
 
flank Genes in the 5-kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any. In the 'Note' column,if available, '(e)' denotes effector while '(i)' for immunity protein

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Proteins        Genes

V. Investigation of the genomic context of the T6SS gene cluster.
1. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the mobile genetic elements database, ACLAME.
 






2. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the virulence factor database, VFDB.
 






3. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against against the antibiotic resistance database, ARDB.
 







Homology Effector list
EC042_4529

Effector identified
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProduct  Homolog
1BC1002_42931191291..1191776 [+], 486295699896type VI secretion system effector EC042_4529

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Proteins        Genes
N/A
N/A