SecReT6
I. Summary
SecReT6 ID493 insolico
StrainBurkholderia sp. CCGE1002
Repliconchromosome II [Browse all T6SS(s) in this replicon]
AccessionNC_014118
Location2453895..2478444
Comment
FunctionN/A
T6SS TypeType i; subtype i4a
insolico Bioinformatics investigation has been performed on this T6SS.

II. T6SS components
ComponentTssHTssDTssLTssITssATssBTssCTssETssF
Number111111111
ComponentTssGTssJTssKTssM
Number1011
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III. genome coordinates of the T6SS gene cluster
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProductNote
1BC1002_54412450472..2450621 [+], 150295700987hypothetical protein 
2BC1002_54422450713..2451405 [-], 693295700988hypothetical protein 
3BC1002_54432451737..2452141 [-], 405295700989hypothetical protein 
4BC1002_54442453895..2454431 [+], 537295700990type VI secretion protein  TssB
5BC1002_54452454514..2456022 [+], 1509295700991type VI secretion protein EvpB  TssC
6BC1002_54462456089..2456580 [+], 492295700992hypothetical protein  TssD
7BC1002_54472456648..2457085 [+], 438295700993type VI secretion system lysozyme-like protein  TssE
8BC1002_54482457105..2458862 [+], 1758295700994type VI secretion protein  TssF
9BC1002_54492458817..2459911 [+], 1095295700995type VI secretion protein  TssG
10BC1002_54502459923..2462655 [+], 2733295700996type VI secretion ATPase, ClpV1 family  TssH
11BC1002_54512462660..2464582 [+], 1923295700997ImpA family type VI secretion-associated protein  TssI
12BC1002_54522464591..2465322 [+], 732295700998hypothetical protein 
13BC1002_54532465325..2465711 [+], 387295700999hypothetical protein 
14BC1002_54542465725..2465967 [+], 243295701000hypothetical protein 
15BC1002_54552465981..2466967 [+], 987295701001family 3 extracellular solute-binding protein 
16BC1002_54562467005..2468279 [+], 1275295701002sodium:dicarboxylate symporter 
17BC1002_54572468289..2468990 [+], 702295701003aspartate racemase 
18BC1002_54582468987..2470411 [+], 1425295701004sodium:dicarboxylate symporter 
19BC1002_54592470408..2470908 [+], 501295701005hypothetical protein 
20BC1002_54602470905..2472239 [+], 1335295701006type VI secretion protein  TssK
21BC1002_54612472292..2473044 [+], 753295701007type IV / VI secretion system, DotU  TssL
22BC1002_54622473112..2477305 [+], 4194295701008IcmF-like protein  TssM
23BC1002_54632477302..2478444 [+], 1143295701009type VI secretion-associated protein, ImpA family  TssA
24BC1002_54642478511..2479407 [+], 897295701010hypothetical protein 
25BC1002_54652479574..2480539 [+], 966295701011CMP/dCMP deaminase zinc-binding protein 
26BC1002_54662480939..2481541 [-], 603295701012phosphoesterase PA-phosphatase-like protein 
27BC1002_54672481886..2482236 [+], 351295701013hypothetical protein 
28BC1002_54682482236..2482808 [+], 573295701014methyltransferase type 12 
 
flank Genes in the 5-kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any. In the 'Note' column,if available, '(e)' denotes effector while '(i)' for immunity protein

Download FASTA format files
Proteins        Genes

V. Investigation of the genomic context of the T6SS gene cluster.
1. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the mobile genetic elements database, ACLAME.
 






2. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the virulence factor database, VFDB.
 






3. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against against the antibiotic resistance database, ARDB.
 






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