SecReT6
SecReT6
I. Summary
SecReT6 ID494 insolico
StrainBurkholderia sp. CCGE1002
Repliconchromosome III [Browse all T6SS(s) in this replicon]
AccessionNC_014119
Location691334..721966
Comment
FunctionN/A
insolico Bioinformatics investigation has been performed on this T6SS.

II. T6SS components
ComponentTssHTssDTssLTssITssATssBTssCTssETssF
Number112110111
ComponentTssGTssJTssKTssM
Number1111
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III. genome coordinates of the T6SS gene cluster
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProductNote
1BC1002_6232687127..687915 [-], 789295681029hypothetical protein 
2BC1002_6233688221..689807 [+], 1587295681030phospholipase D/transphosphatidylase 
3BC1002_6234689816..690370 [-], 555295681031lipoprotein 
4BC1002_6235690487..690870 [-], 384295681032hypothetical protein 
5BC1002_6236691334..694078 [-], 2745295681033type VI secretion ATPase, ClpV1 family  TssH
6BC1002_6237694508..695218 [+], 711295681034hypothetical protein 
7BC1002_6238695187..696023 [+], 837295681035virulence protein SciE type  TagJ
8BC1002_6239696020..696538 [+], 519295681036type VI secretion system lysozyme-like protein  TssE
9BC1002_6240696540..698420 [+], 1881295681037type VI secretion protein  TssF
10BC1002_6241698423..699490 [+], 1068295681038type VI secretion protein  TssG
11BC1002_6242699487..700557 [+], 1071295681039type VI secretion-associated protein, ImpA family  TssA
12BC1002_6243700673..701641 [+], 969295681040fimbrial protein 
13BC1002_6244701682..703085 [+], 1404295681041hypothetical protein 
14BC1002_6245702990..706424 [-], 3435295681042hypothetical protein 
15BC1002_6246706441..706707 [-], 267295681043PAAR repeat-containing protein  PAAR
16BC1002_6247706798..709332 [-], 2535295681044ImpA family type VI secretion-associated protein  TssI
17BC1002_6248709366..713331 [-], 3966295681045type VI secretion protein IcmF  TssM
18BC1002_6249713345..714679 [-], 1335295681046DotU family type IV / VI secretion system protein  TssL
19BC1002_6250714676..716025 [-], 1350295681047type VI secretion protein  TssK
20BC1002_6251716031..716576 [-], 546295681048type VI secretion lipoprotein  TssJ
21BC1002_6252716718..717200 [-], 483295681049type VI secretion system effector  TssD
22BC1002_6253717311..718864 [-], 1554295681050type VI secretion protein EvpB  TssC
23BC1002_6255719604..721283 [-], 1680295681051OmpA/MotB domain-containing protein  TagL
24BC1002_6256721280..721966 [-], 687295681052DotU family type IV / VI secretion system protein  TssL
25BC1002_6257721994..722554 [-], 561295681053fimbrial protein 
26BC1002_6258722628..725468 [-], 2841295681054fimbrial biogenesis outer membrane usher protein 
27BC1002_6259725481..726254 [-], 774295681055Pili assembly chaperone, N-terminal 
28BC1002_6260726345..726893 [-], 549295681056fimbrial protein 
 
flank Genes in the 5-kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any. In the 'Note' column,if available, '(e)' denotes effector while '(i)' for immunity protein

Download FASTA format files
Proteins        Genes

V. Investigation of the genomic context of the T6SS gene cluster.
1. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the mobile genetic elements database, ACLAME.
 






2. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the virulence factor database, VFDB.
 






3. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against against the antibiotic resistance database, ARDB.
 






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